C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD9 homolog A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025740 Rad9a-201 ENSMUSG00000024824 10090 - 19:4195198-4201603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000025740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000025740 17.016±0.49 12.193±0.05 10.899±0.44 14.000±1.74 22.588±3.99 14.110±0.71 9.371±0.06 13.990±1.55 17.936±4.40 18.393±2.18 15.932±1.39 17.453±4.63 3.445±1.65

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IEA DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0008408 IEA 3'-5' exonuclease activity
GO:0008853 IEA exodeoxyribonuclease III activity
GO:0017124 IEA SH3 domain binding
GO:0019899 IEA enzyme binding
GO:0019901 IEA protein kinase binding
GO:0030896 IEA checkpoint clamp complex
GO:0031573 IGI intra-S DNA damage checkpoint
GO:0042826 IEA histone deacetylase binding
GO:0071479 IEA cellular response to ionizing radiation
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:1902231 IGI positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307980 RAD9A-001 protein_coding Homo_sapiens 0 1166
ENST00000312989 PPP1CA-002 protein_coding Homo_sapiens 0 211
ENST00000376745 PPP1CA-001 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000526510 PPP1CA-003 retained_intron Homo_sapiens 1.99965e-42 178
ENST00000529100 RAD9A-003 processed_transcript Homo_sapiens 0 717
ENST00000530934 RAD9A-002 retained_intron Homo_sapiens 0 429
ENST00000532446 PPP1CA-004 processed_transcript Homo_sapiens 1.00053e-42 178
ENST00000535644 RAD9A-009 processed_transcript Homo_sapiens 0 660
ENST00000538013 RAD9A-004 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000541132 RAD9A-008 retained_intron Homo_sapiens 0 455
ENST00000542139 RAD9A-006 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000543808 RAD9A-005 processed_transcript Homo_sapiens 0 688
ENST00000544620 RAD9A-007 protein_coding Homo_sapiens 0 492

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