C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, catalytic subunit, alpha isozyme
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000312989 PPP1CA-002 ENSG00000172531 9606 - 11:67398183-67401793 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312989
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312989 16.021±0.00 48.484±0.00 21.462±0.00 18.817±0.00 51.925±0.00 14.675±0.00 32.726±0.00 16.481±0.00 22.133±3.63 27.043±1.15 20.679±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000164 IEA protein phosphatase type 1 complex
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0004722 IEA protein serine/threonine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005977 IEA glycogen metabolic process
GO:0005979 IEA regulation of glycogen biosynthetic process
GO:0005981 IEA regulation of glycogen catabolic process
GO:0006470 ISS protein dephosphorylation
GO:0007049 IEA cell cycle
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0016787 IEA hydrolase activity
GO:0016791 ISS phosphatase activity
GO:0019433 TAS triglyceride catabolic process
GO:0030324 IEA lung development
GO:0030512 TAS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0032922 ISS circadian regulation of gene expression
GO:0042587 IEA glycogen granule
GO:0042752 IMP regulation of circadian rhythm
GO:0043005 IEA neuron projection
GO:0043021 IEA ribonucleoprotein complex binding
GO:0043025 IEA neuronal cell body
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0043197 IEA dendritic spine
GO:0043204 IEA perikaryon
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0048754 IEA branching morphogenesis of an epithelial tube
GO:0051301 IEA cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0070688 IDA MLL5-L complex
GO:0072357 IDA PTW/PP1 phosphatase complex
GO:2001241 IEA positive regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180575 PPP1CA-201 protein_coding Mus_musculus 0 1404
ENSMUST00000046094 Ppp1ca-201 protein_coding Mus_musculus 0 1404
ENSDART00000127716 ppp1cc-201 protein_coding Danio_rerio 0 761
ENSMUST00000118909 AC164158.1-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000086294 Ppp1cc-002 protein_coding Mus_musculus 0 628
ENSMUST00000102528 Ppp1cc-001 protein_coding Mus_musculus 0 628
ENSDART00000130498 ppp1cbl-201 protein_coding Danio_rerio 0 556
ENSMUST00000122076 Gm14122-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000132555 Ppp1cc-005 retained_intron Mus_musculus 0 477
ENSMUST00000128309 Ppp1cc-009 retained_intron Mus_musculus 0 477
ENSMUST00000135090 Ppp1cc-004 retained_intron Mus_musculus 0 283
ENSMUST00000181329 RAD9A-201 protein_coding Mus_musculus 0 211
ENSMUST00000025740 Rad9a-201 protein_coding Mus_musculus 0 211
ENSMUST00000134719 Ppp1cc-008 processed_transcript Mus_musculus 5e-37 159
ENSMUST00000151184 Ppp1cc-006 processed_transcript Mus_musculus 5e-37 159

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