C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: barrier to autointegration factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025762 Banf1-201 ENSMUSG00000024844 10090 - 19:5364641-5366645 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025762
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025762 63.381±9.19 57.744±19.35 82.588±11.59 65.968±41.15 70.291±28.74 57.531±8.14 67.900±7.98 63.808±8.58 88.710±55.78 51.822±1.70 96.951±5.89 81.087±19.04 85.741±51.31 41.063±18.31

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0005694 IEA chromosome
GO:0015074 IDA DNA integration
GO:0075713 TAS establishment of integrated proviral latency

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312175 BANF1-001 protein_coding Homo_sapiens 0 610
ENST00000412556 BANF1P3-001 processed_pseudogene Homo_sapiens 0 339
ENST00000420029 BANF1P4-001 processed_pseudogene Homo_sapiens 0 346
ENST00000445560 BANF1-002 protein_coding Homo_sapiens 0 577
ENST00000524628 BANF1-008 processed_transcript Homo_sapiens 0 363
ENST00000524663 BANF1-007 processed_transcript Homo_sapiens 3e-17 92
ENST00000527348 BANF1-005 protein_coding Homo_sapiens 0 470
ENST00000528648 BANF1-006 processed_transcript Homo_sapiens 0 252
ENST00000530204 BANF1-003 protein_coding Homo_sapiens 5e-39 165
ENST00000533166 BANF1-004 protein_coding Homo_sapiens 0 562

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