C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein binding, family A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025830 Apba1-201 ENSMUSG00000024897 10090 + 19:23758876-23949597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025830
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025830 2.611±0.00 0.507±0.32 1.682±0.00 15.410±6.26 0.938±0.57 0.467±0.14 0.839±0.36 0.772±0.08 0.088±0.02 1.073±0.58 0.187±0.07 2.450±1.24 0.557±0.40 7.499±3.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HU CIL_0002HU_0002 CGP 19:23758876-24031019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0001701 IGI in utero embryonic development
GO:0005515 IPI protein binding
GO:0005546 IEA phosphatidylinositol-4,5-bisphosphate binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006886 IPI intracellular protein transport
GO:0007268 IGI synaptic transmission
GO:0007626 IGI locomotory behavior
GO:0010468 IGI regulation of gene expression
GO:0014047 IGI glutamate secretion
GO:0014051 IMP gamma-aminobutyric acid secretion
GO:0016020 IDA membrane
GO:0030165 IEA PDZ domain binding
GO:0032403 IEA protein complex binding
GO:0035264 IGI multicellular organism growth
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114483 apba1b-201 protein_coding Danio_rerio 0 854
ENSDART00000140511 apba1b-001 protein_coding Danio_rerio 0 809
ENSDART00000137719 apba1b-002 retained_intron Danio_rerio 0 501
ENST00000265381 APBA1-001 protein_coding Homo_sapiens 0 3373
ENST00000411764 APBA2-201 protein_coding Homo_sapiens 0 743
ENST00000470082 APBA1-002 processed_transcript Homo_sapiens 0 303
ENST00000558259 APBA2-202 protein_coding Homo_sapiens 0 797
ENST00000558330 APBA2-002 protein_coding Homo_sapiens 0 743
ENST00000558402 APBA2-001 protein_coding Homo_sapiens 0 797
ENST00000561069 APBA2-004 protein_coding Homo_sapiens 0 797
ENST00000612449 APBA2-203 protein_coding Homo_sapiens 0 743
ENST00000617471 APBA1-001 protein_coding Homo_sapiens 0 1718
ENST00000620457 APBA2-204 protein_coding Homo_sapiens 0 797
ENST00000620509 APBA1-002 processed_transcript Homo_sapiens 0 303

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