C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase, lymphoid specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025965 Hells-001 ENSMUSG00000025001 10090 + 19:38930915-38971051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025965 0.817±0.50 0.638±0.25 0.338±0.12 2.226±1.73 0.544±0.30 1.073±0.36 0.044±0.01 0.113±0.04 3.601±4.35 0.324±0.02 0.040±0.03 1.849±0.71 3.479±2.26 2.179±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RX CIL_0003RX_0002 CGP 19:38836579-38971051
CIL_00067G CIL_00067G_0002 CGP 19:38930915-39042693

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0001655 IMP urogenital system development
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005721 IDA pericentric heterochromatin
GO:0006306 IMP DNA methylation
GO:0006342 IMP chromatin silencing
GO:0006346 IMP methylation-dependent chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0007067 IEA mitotic nuclear division
GO:0007275 IMP multicellular organismal development
GO:0010216 IMP maintenance of DNA methylation
GO:0030098 TAS lymphocyte differentiation
GO:0031508 IMP pericentric heterochromatin assembly
GO:0043066 IMP negative regulation of apoptotic process
GO:0046651 IEP lymphocyte proliferation
GO:2001243 IMP negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239026 HELLS-201 protein_coding Homo_sapiens 0 2915
ENST00000348459 HELLS-001 protein_coding Homo_sapiens 0 3227
ENST00000371327 HELLS-002 protein_coding Homo_sapiens 0 1055
ENST00000371332 HELLS-202 protein_coding Homo_sapiens 0 2802
ENST00000394036 HELLS-203 protein_coding Homo_sapiens 0 1618
ENST00000394045 HELLS-204 protein_coding Homo_sapiens 0 1600
ENST00000419900 HELLS-003 protein_coding Homo_sapiens 0 603
ENST00000423902 CHD7-001 protein_coding Homo_sapiens 0.0000001 66
ENST00000462057 HELLS-004 processed_transcript Homo_sapiens 0 315
ENST00000464030 HELLS-006 retained_intron Homo_sapiens 9e-34 147
ENST00000466552 HELLS-005 retained_intron Homo_sapiens 0 322
ENST00000525508 CHD7-003 protein_coding Homo_sapiens 0.00000004 66

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