C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase, lymphoid-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348459 HELLS-001 ENSG00000119969 9606 + 10:94545817-94602099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastKidneyLiverMuscleOvaryPlacentaTestisENST00000348459
Transcript ID Adipose Adrenal Bladder Breast Kidney Liver Muscle Ovary Placenta Testis
ENST00000348459 0.078±0.00 0.678±0.00 0.431±0.00 0.629±0.34 0.203±0.00 1.172±0.00 0.097±0.00 3.050±2.69 0.860±0.76 5.047±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067M CIL_00067M_0001 CGP 10:94333226-94535930
CIL_0003RX CIL_0003RX_0001 CGP 10:94402504-94613905
CIL_00067G CIL_00067G_0001 CGP 10:94501434-94736190

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 ISS chromosome, centromeric region
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005721 ISS pericentric heterochromatin
GO:0006346 ISS methylation-dependent chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0007067 IEA mitotic nuclear division
GO:0007275 ISS multicellular organismal development
GO:0010216 ISS maintenance of DNA methylation
GO:0031508 ISS pericentric heterochromatin assembly
GO:0046651 ISS lymphocyte proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025965 Hells-001 protein_coding Mus_musculus 0 3227
ENSMUST00000127968 Hells-005 processed_transcript Mus_musculus 0 1022
ENSMUST00000145051 Hells-003 protein_coding Mus_musculus 0 664
ENSMUST00000155465 Hells-006 processed_transcript Mus_musculus 3e-17 95

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