C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T cell leukemia, homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026236 Tlx1-001 ENSMUSG00000025215 10090 + 19:45150680-45156943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverOvaryPlacentaENSMUST00000026236
Transcript ID Adipose Brain Breast Colon Heart Liver Ovary Placenta
ENSMUST00000026236 0.012±0.00 0.219±0.00 0.054±0.04 0.017±0.00 0.059±0.04 0.013±0.01 0.031±0.00 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0007ZR CIL_0007ZR_0002 VISTA 19:45042853-45643685
CIL_0001C6 CIL_0001C6_0003 CGP 19:45150680-45235812

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0007417 IMP central nervous system development
GO:0008284 IMP positive regulation of cell proliferation
GO:0030182 IMP neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IMP cell fate commitment
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0048535 TAS lymph node development
GO:0048536 IMP spleen development
GO:0048645 IMP organ formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370196 TLX1-001 protein_coding Homo_sapiens 0 1483
ENST00000463716 TLX1-002 protein_coding Homo_sapiens 0 390
ENST00000467928 TLX1-003 protein_coding Homo_sapiens 0 1389
ENST00000533319 TLX1-004 processed_transcript Homo_sapiens 0.000000000001 77

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