C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domains containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026269 Limd1-201 ENSMUSG00000025239 10090 + 9:123478701-123521548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026269 20.552±3.73 13.939±0.71 13.268±0.02 3.241±1.40 19.732±2.61 16.525±3.70 10.787±1.69 18.072±1.07 8.894±2.17 18.728±3.47 19.026±0.79 20.499±5.28 28.499±11.87 2.671±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073L CIL_00073L_0002 CGP 9:123366940-123521548
CIL_00073I CIL_00073I_0002 CGP 9:123478701-123592598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0001666 ISS response to hypoxia
GO:0002076 IMP osteoblast development
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005912 ISS adherens junction
GO:0005925 ISS focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0007010 ISS cytoskeleton organization
GO:0008270 IEA zinc ion binding
GO:0008360 ISS regulation of cell shape
GO:0016310 ISS phosphorylation
GO:0016442 IEA RISC complex
GO:0016477 ISS cell migration
GO:0033962 IEA cytoplasmic mRNA processing body assembly
GO:0035195 IEA gene silencing by miRNA
GO:0035331 ISS negative regulation of hippo signaling
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0090090 IMP negative regulation of canonical Wnt signaling pathway
GO:2000637 ISS positive regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273317 LIMD1-001 protein_coding Homo_sapiens 0 1574
ENST00000440097 LIMD1-002 protein_coding Homo_sapiens 0 1336
ENST00000465039 LIMD1-004 processed_transcript Homo_sapiens 0 538
ENST00000474665 LIMD1-003 retained_intron Homo_sapiens 0 462

Loading