C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026663 Cbx8-001 ENSMUSG00000025578 10090 - 11:119036305-119040969 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026663
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026663 0.583±0.24 1.080±0.31 1.212±0.10 1.123±0.61 0.845±0.65 0.592±0.13 0.387±0.08 0.526±0.15 0.469±0.13 0.693±0.20 0.387±0.10 1.247±0.58 2.454±1.12 0.277±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002X9 CIL_0002X9_0002 CGP 11:119022962-119040969
CIL_0002WM CIL_0002WM_0002 CGP 11:119036305-119086221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0000790 IEA nuclear chromatin
GO:0000792 IDA heterochromatin
GO:0003727 IDA single-stranded RNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006342 ISS chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0016574 IDA histone ubiquitination
GO:0031519 IDA PcG protein complex
GO:0035064 IEA methylated histone binding
GO:0035102 ISS PRC1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269385 CBX8-001 protein_coding Homo_sapiens 0 1158
ENST00000413392 CBX8-002 protein_coding Homo_sapiens 0 396
ENST00000427800 CBX8-004 protein_coding Homo_sapiens 0 392
ENST00000485449 CBX8-003 processed_transcript Homo_sapiens 0 316

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