C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026665 Cbx4-001 ENSMUSG00000039989 10090 - 11:119077573-119086221 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026665 6.780±0.51 61.620±4.20 5.699±2.44 4.185±1.17 17.037±7.77 4.547±0.71 1.868±0.65 3.703±1.33 2.085±1.49 8.793±1.23 0.419±0.08 10.711±4.36 5.503±1.57 0.701±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WM CIL_0002WM_0002 CGP 11:119036305-119086221
CIL_0005AW CIL_0005AW_0002 CGP 11:119077573-119228499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003682 IDA chromatin binding
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0016604 IDA nuclear body
GO:0016874 IEA ligase activity
GO:0016925 IEA protein sumoylation
GO:0019899 IEA enzyme binding
GO:0031519 ISS PcG protein complex
GO:0032183 IDA SUMO binding
GO:0035064 IDA methylated histone binding
GO:0035102 ISS PRC1 complex
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051219 IPI phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269397 CBX4-001 protein_coding Homo_sapiens 0 1831
ENST00000448310 CBX4-002 protein_coding Homo_sapiens 0 815
ENST00000494546 CBX4-003 retained_intron Homo_sapiens 0 394
ENST00000495122 CBX4-004 protein_coding Homo_sapiens 3e-40 169

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