C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jade family PHD finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026865 Jade1-201 ENSMUSG00000025764 10090 + 3:41555734-41616862 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryPlacentaTestisENSMUST00000026865
Transcript ID Breast Liver Ovary Placenta Testis
ENSMUST00000026865 0.534±0.00 0.819±0.33 9.652±0.67 23.300±10.42 1.067±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0002 CGP 3:41066326-41616862
CIL_00001M CIL_00001M_0002 CGP 3:41555734-41742514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 ISS histone acetyltransferase complex
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043966 ISS histone H3 acetylation
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043983 ISS histone H4-K12 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121706 jade1-201 protein_coding Danio_rerio 0 483
ENSDART00000042060 jade1-001 protein_coding Danio_rerio 0 483
ENSDART00000143852 jade1-003 retained_intron Danio_rerio 0 246
ENST00000226319 JADE1-201 protein_coding Homo_sapiens 0 3402
ENST00000413543 JADE1-001 protein_coding Homo_sapiens 0 2058
ENST00000452328 JADE1-003 protein_coding Homo_sapiens 0 2885
ENST00000503565 SCLT1-009 processed_transcript Homo_sapiens 0.00000000000002 84
ENST00000503785 JADE1-007 protein_coding Homo_sapiens 0 579
ENST00000504089 JADE1-005 protein_coding Homo_sapiens 0 597
ENST00000507833 JADE1-009 protein_coding Homo_sapiens 0 584
ENST00000508997 JADE1-010 protein_coding Homo_sapiens 0 555
ENST00000510308 JADE1-006 protein_coding Homo_sapiens 0 623
ENST00000511647 JADE1-002 protein_coding Homo_sapiens 0 2058
ENST00000511925 JADE1-011 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000512960 JADE1-004 protein_coding Homo_sapiens 0 3188
ENST00000514740 JADE1-008 protein_coding Homo_sapiens 7e-32 141
ENST00000610919 JADE1-202 protein_coding Homo_sapiens 0 3400
ENST00000611140 JADE1-203 protein_coding Homo_sapiens 0 3402

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