C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin interaction motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026997 Uimc1-201 ENSMUSG00000025878 10090 - 13:55027880-55100295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026997
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026997 1.857±0.51 1.619±0.00 2.450±0.83 1.730±0.59 1.518±0.53 1.148±0.27 1.533±0.38 2.289±1.68 2.789±0.75 1.481±0.33 3.374±1.07 2.408±1.04 1.968±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0001A8 CIL_0001A8_0002 CGP 13:55005985-55100300
CIL_0000OX CIL_0000OX_0004 CGP 13:55027880-55134825

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006302 ISS double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0010212 ISS response to ionizing radiation
GO:0031572 ISS G2 DNA damage checkpoint
GO:0042393 ISS histone binding
GO:0045739 ISS positive regulation of DNA repair
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046965 IDA retinoid X receptor binding
GO:0070530 ISS K63-linked polyubiquitin binding
GO:0070531 ISS BRCA1-A complex
GO:0070537 ISS histone H2A K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377227 UIMC1-001 protein_coding Homo_sapiens 0 2237
ENST00000417486 UIMC1-002 retained_intron Homo_sapiens 0 438
ENST00000503273 UIMC1-010 processed_transcript Homo_sapiens 0 656
ENST00000505879 UIMC1-009 processed_transcript Homo_sapiens 1e-16 90
ENST00000506128 UIMC1-006 protein_coding Homo_sapiens 0 931
ENST00000507513 UIMC1-007 protein_coding Homo_sapiens 0 300
ENST00000509236 UIMC1-014 protein_coding Homo_sapiens 0 562
ENST00000510698 UIMC1-201 protein_coding Homo_sapiens 0 652
ENST00000511320 UIMC1-004 protein_coding Homo_sapiens 0 2180
ENST00000512031 UIMC1-003 nonsense_mediated_decay Homo_sapiens 0 2167
ENST00000515488 UIMC1-013 retained_intron Homo_sapiens 0 438

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