C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000OX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000089679-ENSDARG00000036573 CGP 7955 11:37944368-37985349
GeneTranscriptPositionBiotype
ENSDARG00000036573 (CU914629.1)
Uncharacterized protein 		ENSDART00000053133 (CU914629.1-001) 37984948-37985349 protein_coding
ENSDART00000102936 (CU914629.1-201) 37968932-37985346 protein_coding
ENSDARG00000083733 (SCARNA14)
Small Cajal body specific RNA 14 		ENSDART00000119133 (SCARNA14.1-201) 37953904-37954033 snoRNA
ENSDARG00000089679 (UIMC1 (1 of 2))
ubiquitin interaction motif containing 1 		ENSDART00000128208 (UIMC1 (1 of 2)-201) 37944368-37967845 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000OX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000091187-ENSDARG00000060695 CGP 7955 21:36375402-36433965
GeneTranscriptPositionBiotype
ENSDARG00000060695 (znf346)
zinc finger protein 346 		ENSDART00000085786 (znf346-001) 36416244-36433965 protein_coding
ENSDART00000148956 (znf346-002) 36416606-36427705 retained_intron
ENSDARG00000091187 (UIMC1 (2 of 2))
ubiquitin interaction motif containing 1 		ENSDART00000129439 (UIMC1 (2 of 2)-201) 36375402-36415100 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000OX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087206-ENSG00000113761 CGP 9606 5:176905005-177081189
GeneTranscriptPositionBiotype
ENSG00000087206 (UIMC1)
ubiquitin interaction motif containing 1 		ENST00000377227 (UIMC1-001) 176905005-177006408 protein_coding
ENST00000417486 (UIMC1-002) 176969941-177006365 retained_intron
ENST00000428382 (UIMC1-008) 176982521-177006570 protein_coding
ENST00000503273 (UIMC1-010) 176908633-176968889 processed_transcript
ENST00000505229 (UIMC1-011) 176905658-176907307 retained_intron
ENST00000505879 (UIMC1-009) 176975416-176980276 processed_transcript
ENST00000506128 (UIMC1-006) 176905050-177006581 protein_coding
ENST00000507513 (UIMC1-007) 176970832-177006714 protein_coding
ENST00000509236 (UIMC1-014) 176969283-177022602 protein_coding
ENST00000510376 (UIMC1-012) 176905193-176906176 retained_intron
ENST00000510698 (UIMC1-201) 176905066-176970793 protein_coding
ENST00000511320 (UIMC1-004) 176905050-177006751 protein_coding
ENST00000512031 (UIMC1-003) 176905053-177006715 nonsense_mediated_decay
ENST00000515488 (UIMC1-013) 176970690-177022633 retained_intron
ENSG00000113761 (ZNF346)
zinc finger protein 346 		ENST00000358149 (ZNF346-001) 177022696-177065985 protein_coding
ENST00000503039 (ZNF346-008) 177022735-177081189 protein_coding
ENST00000503425 (ZNF346-004) 177022704-177064966 protein_coding
ENST00000504600 (ZNF346-010) 177044327-177050892 retained_intron
ENST00000506693 (ZNF346-002) 177022696-177065241 protein_coding
ENST00000508155 (ZNF346-006) 177022716-177065458 nonsense_mediated_decay
ENST00000510933 (ZNF346-009) 177022904-177042249 retained_intron
ENST00000511834 (ZNF346-005) 177022732-177065965 protein_coding
ENST00000512315 (ZNF346-003) 177022696-177080554 protein_coding
ENST00000513587 (ZNF346-007) 177022735-177065018 nonsense_mediated_decay
ENSG00000251666 (ZNF346-IT1)
ZNF346 intronic transcript 1 (non-protein coding) 		ENST00000515264 (ZNF346-IT1-001) 177051714-177052963 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0000OX_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025878-ENSMUSG00000021481 CGP 10090 13:55027880-55134825
GeneTranscriptPositionBiotype
ENSMUSG00000021481 (Zfp346)
zinc finger protein 346 		ENSMUST00000021937 (Zfp346-001) 55105327-55134825 protein_coding
ENSMUST00000159147 (Zfp346-002) 55105333-55132740 protein_coding
ENSMUST00000159278 (Zfp346-004) 55105332-55132705 protein_coding
ENSMUST00000160310 (Zfp346-010) 55122016-55132356 retained_intron
ENSMUST00000160660 (Zfp346-008) 55105337-55132496 nonsense_mediated_decay
ENSMUST00000161018 (Zfp346-006) 55105311-55122478 nonsense_mediated_decay
ENSMUST00000161077 (Zfp346-009) 55105399-55132375 protein_coding
ENSMUST00000161315 (Zfp346-007) 55105314-55132387 protein_coding
ENSMUST00000161551 (Zfp346-013) 55105333-55130600 nonsense_mediated_decay
ENSMUST00000162288 (Zfp346-005) 55113091-55113973 retained_intron
ENSMUST00000162428 (Zfp346-012) 55105339-55132588 nonsense_mediated_decay
ENSMUST00000162476 (Zfp346-003) 55105333-55132755 nonsense_mediated_decay
ENSMUST00000162653 (Zfp346-011) 55130224-55132630 retained_intron
ENSMUSG00000025878 (Uimc1)
ubiquitin interaction motif containing 1 		ENSMUST00000026997 (Uimc1-201) 55027880-55100295 protein_coding
ENSMUST00000099496 (Uimc1-002) 55028295-55100300 protein_coding
ENSMUST00000124561 (Uimc1-004) 55085639-55093508 retained_intron
ENSMUST00000127195 (Uimc1-001) 55027880-55100300 protein_coding
ENSMUST00000128641 (Uimc1-003) 55077457-55086192 retained_intron
ENSMUST00000133187 (Uimc1-005) 55075136-55100299 retained_intron
ENSMUST00000148702 (Uimc1-006) 55028195-55100254 nonsense_mediated_decay
ENSMUSG00000094446 (Gm6344)
predicted gene 6344 		ENSMUST00000075962 (Gm6344-001) 55085777-55086259 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000OX_0001ENSDARG00000036573ENSDART00000053133ENSDART00000102936ENSDARG00000083733ENSDART00000119133ENSDARG00000089679ENSDART00000128208CIL_0000OX_0002ENSDARG00000060695ENSDART00000085786ENSDART00000148956ENSDARG00000091187ENSDART00000129439CIL_0000OX_0003ENSG00000087206ENST00000377227ENST00000417486ENST00000428382ENST00000503273ENST00000505229ENST00000505879ENST00000506128ENST00000507513ENST00000509236ENST00000510376ENST00000510698ENST00000511320ENST00000512031ENST00000515488ENSG00000113761ENST00000358149ENST00000503039ENST00000503425ENST00000504600ENST00000506693ENST00000508155ENST00000510933ENST00000511834ENST00000512315ENST00000513587ENSG00000251666ENST00000515264CIL_0000OX_0004ENSMUSG00000021481ENSMUST00000021937ENSMUST00000159147ENSMUST00000159278ENSMUST00000160310ENSMUST00000160660ENSMUST00000161018ENSMUST00000161077ENSMUST00000161315ENSMUST00000161551ENSMUST00000162288ENSMUST00000162428ENSMUST00000162476ENSMUST00000162653ENSMUSG00000025878ENSMUST00000026997ENSMUST00000099496ENSMUST00000124561ENSMUST00000127195ENSMUST00000128641ENSMUST00000133187ENSMUST00000148702ENSMUSG00000094446ENSMUST00000075962
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000OX_0001ENSDARG00000036573ENSDART00000053133ENSDART00000102936ENSDARG00000083733ENSDART00000119133ENSDARG00000089679ENSDART00000128208CIL_0000OX_0002ENSDARG00000060695ENSDART00000085786ENSDARG00000091187ENSDART00000129439CIL_0000OX_0003ENSG00000087206ENST00000377227ENST00000417486ENST00000503273ENST00000506128ENST00000507513ENST00000509236ENST00000510376ENST00000510698ENST00000511320ENST00000512031ENST00000515488ENSG00000113761ENST00000358149ENST00000503039ENST00000503425ENST00000504600ENST00000506693ENST00000508155ENST00000510933ENST00000511834ENST00000513587ENSG00000251666ENST00000515264CIL_0000OX_0004ENSMUSG00000021481ENSMUST00000021937ENSMUST00000161315ENSMUSG00000025878ENSMUST00000026997ENSMUST00000099496ENSMUST00000124561ENSMUST00000148702ENSMUSG00000094446ENSMUST00000075962
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036573 ENSDART00000053133 N/A N/A N/A 3.946±0.00 N/A N/A 5.848±0.00 2302.013±2053.45 451.314±0.00 N/A 25.866±0.00 N/A N/A N/A
ENSDART00000102936 N/A N/A N/A 1.104±0.52 N/A N/A 0.662±0.57 6.635±0.00 5.648±0.00 N/A 0.822±0.00 N/A N/A N/A
ENSDARG00000083733 ENSDART00000119133 N/A N/A N/A 52.646±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000089679 ENSDART00000128208 N/A N/A N/A 0.554±0.29 N/A N/A 1.093±0.34 1.544±0.00 0.272±0.00 N/A 0.518±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060695 ENSDART00000085786 N/A N/A N/A 18.189±8.41 N/A N/A 13.835±4.94 10.871±3.58 1.155±0.00 N/A 3.027±0.00 N/A N/A N/A
ENSDART00000148956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000091187 ENSDART00000129439 N/A N/A N/A 0.897±0.54 N/A N/A 1.603±0.87 2.136±1.02 0.149±0.00 N/A 0.800±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087206 ENST00000377227 N/A N/A 0.609±0.00 N/A N/A N/A N/A N/A N/A N/A 0.353±0.00 3.694±0.00 N/A N/A
ENST00000417486 N/A N/A 0.952±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503273 N/A N/A N/A 6.103±0.00 N/A 3.194±0.00 N/A N/A 4.104±0.00 3.124±0.00 N/A N/A N/A N/A
ENST00000505229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506128 N/A N/A N/A 1.670±0.00 N/A N/A 1.707±0.75 N/A N/A N/A 1.284±0.00 N/A N/A 22.350±0.00
ENST00000507513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.617±0.00 N/A N/A N/A
ENST00000509236 N/A N/A N/A 4.268±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.788±0.00 N/A N/A
ENST00000510698 N/A 9.573±0.00 N/A 3.807±0.00 3.282±0.15 8.093±0.00 2.283±0.00 3.307±2.49 1.990±0.01 5.148±0.00 1.547±0.73 5.711±0.43 2.303±0.95 19.959±6.88
ENST00000511320 2.079±0.00 5.605±0.00 0.580±0.00 1.079±0.00 1.669±0.55 4.179±0.00 N/A 3.636±0.00 1.627±0.00 4.671±0.00 4.168±0.00 3.186±1.75 2.288±0.96 26.771±3.96
ENST00000512031 N/A N/A N/A N/A N/A N/A 2.965±0.00 1.367±0.00 N/A 2.066±0.53 N/A N/A N/A N/A
ENST00000515488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.129±0.00 N/A N/A
ENSG00000113761 ENST00000358149 2.077±0.00 2.641±0.00 1.146±0.00 2.079±0.45 0.981±0.00 2.350±0.00 0.800±0.33 1.777±0.00 1.028±0.03 1.783±0.00 0.865±0.00 2.021±1.46 2.086±0.11 3.380±0.21
ENST00000503039 0.334±0.00 1.036±0.00 N/A 0.622±0.00 N/A N/A N/A N/A N/A N/A N/A 1.019±0.00 0.410±0.00 N/A
ENST00000503425 N/A N/A N/A N/A N/A 0.439±0.00 0.759±0.00 N/A N/A 0.561±0.00 0.799±0.00 0.371±0.00 1.911±0.00 N/A
ENST00000504600 N/A N/A N/A N/A N/A N/A N/A 1.588±0.00 N/A N/A 3.072±0.00 N/A N/A N/A
ENST00000506693 N/A N/A N/A N/A N/A 0.456±0.00 0.671±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000508155 0.508±0.00 N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510933 N/A N/A N/A N/A N/A N/A 0.871±0.00 1.278±0.00 N/A N/A 1.272±0.00 1.272±0.00 N/A N/A
ENST00000511834 N/A N/A N/A 0.649±0.01 N/A N/A N/A 0.876±0.35 N/A N/A N/A 1.059±0.41 N/A 1.850±0.03
ENST00000512315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513587 N/A N/A N/A N/A 0.350±0.00 N/A N/A N/A N/A N/A 0.672±0.00 N/A N/A N/A
ENSG00000251666 ENST00000515264 0.224±0.00 1.458±0.00 0.088±0.00 0.404±0.16 0.386±0.17 0.137±0.06 0.161±0.00 0.267±0.00 0.337±0.24 0.779±0.64 0.045±0.00 0.250±0.15 0.144±0.07 0.370±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021481 ENSMUST00000021937 2.892±1.14 3.700±1.21 9.203±0.12 6.807±3.11 1.177±0.43 1.048±0.19 2.501±0.53 1.816±0.53 2.870±2.69 2.320±0.38 3.145±0.49 4.406±1.26 3.092±1.28 5.580±2.43
ENSMUST00000159147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.504±0.00
ENSMUST00000161551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025878 ENSMUST00000026997 N/A 1.857±0.51 1.619±0.00 2.450±0.83 1.730±0.59 1.518±0.53 1.148±0.27 1.533±0.38 2.289±1.68 2.789±0.75 1.481±0.33 3.374±1.07 2.408±1.04 1.968±0.87
ENSMUST00000099496 2.316±0.42 N/A 7.659±1.34 5.237±1.71 3.636±1.04 1.195±0.26 1.179±0.25 1.704±0.65 3.513±2.45 2.327±0.19 3.386±0.49 11.024±8.14 7.302±4.76 4.538±5.23
ENSMUST00000124561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.703±0.00
ENSMUST00000127195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148702 N/A N/A N/A N/A 1.352±0.00 1.382±0.00 0.409±0.00 0.613±0.11 1.244±0.60 1.123±0.00 0.778±0.07 2.784±1.55 1.496±0.16 0.940±0.06
ENSMUSG00000094446 ENSMUST00000075962 N/A N/A N/A N/A N/A N/A N/A N/A 27.159±0.37 N/A N/A N/A N/A N/A

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