C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin interaction motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025878 Uimc1 10090 - 13:55027880-55100300 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026997 Uimc1-201 55027880-55100295 protein_coding
  ENSMUST00000099496 Uimc1-002 55028295-55100300 protein_coding
  ENSMUST00000124561 Uimc1-004 55085639-55093508 retained_intron
  ENSMUST00000127195 Uimc1-001 55027880-55100300 protein_coding
  ENSMUST00000128641 Uimc1-003 55077457-55086192 retained_intron
  ENSMUST00000133187 Uimc1-005 55075136-55100299 retained_intron
  ENSMUST00000148702 Uimc1-006 55028195-55100254 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026997ENSMUST00000099496ENSMUST00000124561ENSMUST00000148702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026997 N/A 1.857±0.51 1.619±0.00 2.450±0.83 1.730±0.59 1.518±0.53 1.148±0.27 1.533±0.38 2.289±1.68 2.789±0.75 1.481±0.33 3.374±1.07 2.408±1.04 1.968±0.87
ENSMUST00000099496 2.316±0.42 N/A 7.659±1.34 5.237±1.71 3.636±1.04 1.195±0.26 1.179±0.25 1.704±0.65 3.513±2.45 2.327±0.19 3.386±0.49 11.024±8.14 7.302±4.76 4.538±5.23
ENSMUST00000124561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.703±0.00
ENSMUST00000148702 N/A N/A N/A N/A 1.352±0.00 1.382±0.00 0.409±0.00 0.613±0.11 1.244±0.60 1.123±0.00 0.778±0.07 2.784±1.55 1.496±0.16 0.940±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0001A8 CIL_0001A8_0002 CGP 13:55005985-55100300
CIL_0000OX CIL_0000OX_0004 CGP 13:55027880-55134825

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006302 ISS double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0010212 ISS response to ionizing radiation
GO:0031572 ISS G2 DNA damage checkpoint
GO:0042393 ISS histone binding
GO:0045739 ISS positive regulation of DNA repair
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046965 IDA retinoid X receptor binding
GO:0070530 ISS K63-linked polyubiquitin binding
GO:0070531 ISS BRCA1-A complex
GO:0070537 ISS histone H2A K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089679 UIMC1 (1 of 2) ubiquitin interaction motif containing 1 protein_coding Danio_rerio
ENSDARG00000091187 UIMC1 (2 of 2) ubiquitin interaction motif containing 1 protein_coding Danio_rerio
ENSG00000087206 UIMC1 ubiquitin interaction motif containing 1 protein_coding Homo_sapiens

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