C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin interaction motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511320 UIMC1-004 ENSG00000087206 9606 - 5:176905050-177006751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000511320
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000511320 2.079±0.00 5.605±0.00 0.580±0.00 1.079±0.00 1.669±0.55 4.179±0.00 3.636±0.00 1.627±0.00 4.671±0.00 4.168±0.00 3.186±1.75 2.288±0.96 26.771±3.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0001A8 CIL_0001A8_0001 CGP 5:176880869-177022633
CIL_0000OX CIL_0000OX_0003 CGP 5:176905005-177081189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006302 IMP double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0010212 IMP response to ionizing radiation
GO:0031572 IMP G2 DNA damage checkpoint
GO:0042393 IDA histone binding
GO:0045739 IMP positive regulation of DNA repair
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070530 IDA K63-linked polyubiquitin binding
GO:0070531 IDA BRCA1-A complex
GO:0070537 IMP histone H2A K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127195 Uimc1-001 protein_coding Mus_musculus 0 2185
ENSMUST00000026997 Uimc1-201 protein_coding Mus_musculus 0 2180
ENSMUST00000148702 Uimc1-006 nonsense_mediated_decay Mus_musculus 0 1580
ENSMUST00000133187 Uimc1-005 retained_intron Mus_musculus 0 1027
ENSMUST00000099496 Uimc1-002 protein_coding Mus_musculus 0 652
ENSMUST00000124561 Uimc1-004 retained_intron Mus_musculus 0 222
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 207

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