C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbamoyl-phosphate synthetase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027144 Cps1-001 ENSMUSG00000025991 10090 + 1:67123026-67231259 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027144
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027144 0.074±0.06 0.142±0.02 0.015±0.01 0.044±0.02 1.081±0.11 0.717±0.23 0.066±0.06 0.019±0.01 310.381±264.09 0.117±0.07 0.026±0.02 0.198±0.21 0.165±0.12 0.144±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P4 CIL_0006P4_0002 CGP 1:67000517-67231259
CIL_0008T9 CIL_0008T9_0002 VISTA 1:67065819-67667727
CIL_000164 CIL_000164_0002 CGP 1:67123026-69108059

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000050 IC urea cycle
GO:0001101 IEA response to acid
GO:0001889 IEA liver development
GO:0004087 IMP carbamoyl-phosphate synthase (ammonia) activity
GO:0004175 IEA endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005980 IEA glycogen catabolic process
GO:0006508 IEA proteolysis
GO:0006543 IEA glutamine catabolic process
GO:0007494 IEA midgut development
GO:0009636 IEA response to toxic substance
GO:0010043 IEA response to zinc ion
GO:0014075 IEA response to amine
GO:0016595 IEA glutamate binding
GO:0019433 IEA triglyceride catabolic process
GO:0032094 IEA response to food
GO:0032403 IEA protein complex binding
GO:0032496 IEA response to lipopolysaccharide
GO:0033762 IEA response to glucagon
GO:0034201 IEA response to oleic acid
GO:0042493 IEA response to drug
GO:0042594 IEA response to starvation
GO:0042645 IEA mitochondrial nucleoid
GO:0043200 IEA response to amino acid
GO:0043234 IEA protein complex
GO:0044344 IEA cellular response to fibroblast growth factor stimulus
GO:0045909 IEA positive regulation of vasodilation
GO:0046209 IEA nitric oxide metabolic process
GO:0048545 IEA response to steroid hormone
GO:0050667 IEA homocysteine metabolic process
GO:0051384 IEA response to glucocorticoid
GO:0051591 IEA response to cAMP
GO:0055081 IEA anion homeostasis
GO:0060416 IEA response to growth hormone
GO:0070365 IEA hepatocyte differentiation
GO:0071320 IEA cellular response to cAMP
GO:0071377 IEA cellular response to glucagon stimulus
GO:0071400 IEA cellular response to oleic acid
GO:0071548 IEA response to dexamethasone
GO:0072341 IEA modified amino acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233072 CPS1-001 protein_coding Homo_sapiens 0 5662
ENST00000417946 CPS1-002 protein_coding Homo_sapiens 0 414
ENST00000430249 CPS1-011 protein_coding Homo_sapiens 0 5650
ENST00000451903 CPS1-003 protein_coding Homo_sapiens 0 4126
ENST00000467353 CPS1-006 retained_intron Homo_sapiens 0 255
ENST00000470791 CPS1-008 retained_intron Homo_sapiens 0 324
ENST00000479988 CPS1-004 retained_intron Homo_sapiens 0 569
ENST00000497121 CPS1-007 processed_transcript Homo_sapiens 0 706
ENST00000497163 CPS1-005 retained_intron Homo_sapiens 0 195
ENST00000518043 CPS1-010 protein_coding Homo_sapiens 0 414
ENST00000523702 CPS1-009 protein_coding Homo_sapiens 0 501
ENST00000619804 CPS1-201 protein_coding Homo_sapiens 0 1934

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