C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosducin-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027247 Pdcl3-201 ENSMUSG00000026078 10090 + 1:38987814-38997236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027247
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027247 12.737±3.65 11.041±0.80 33.396±9.45 9.953±2.03 8.508±1.30 17.113±1.87 10.901±1.09 13.765±0.78 8.708±3.43 17.476±1.19 13.875±4.25 14.685±6.26 29.774±14.83 2.800±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HK CIL_0004HK_0002 CGP 1:38939149-38997236
CIL_0004HH CIL_0004HH_0002 CGP 1:38987814-39363234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001938 IEA positive regulation of endothelial cell proliferation
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0006457 IEA protein folding
GO:0006915 IEA apoptotic process
GO:0043184 IPI vascular endothelial growth factor receptor 2 binding
GO:0044183 IEA protein binding involved in protein folding
GO:0045766 IEA positive regulation of angiogenesis
GO:0050730 IEA regulation of peptidyl-tyrosine phosphorylation
GO:2000059 IEA negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264254 PDCL3-001 protein_coding Homo_sapiens 0 789
ENST00000398028 PDCL3P5-001 processed_pseudogene Homo_sapiens 0 678
ENST00000416255 PDCL3-003 protein_coding Homo_sapiens 0 399
ENST00000489621 PDCL3P4-001 processed_pseudogene Homo_sapiens 0 680

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