C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004HH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115539-ENSG00000170485 CGP 9606 2:100562690-100996829
GeneTranscriptPositionBiotype
ENSG00000115539 (PDCL3)
phosducin-like 3 		ENST00000264254 (PDCL3-001) 100562690-100576735 protein_coding
ENST00000416255 (PDCL3-003) 100563258-100571632 protein_coding
ENST00000450127 (PDCL3-002) 100568955-100572040 protein_coding
ENSG00000170485 (NPAS2)
neuronal PAS domain protein 2 		ENST00000335681 (NPAS2-001) 100820152-100996829 protein_coding
ENST00000427413 (NPAS2-004) 100821025-100948299 protein_coding
ENST00000433408 (NPAS2-012) 100982254-100996055 protein_coding
ENST00000448812 (NPAS2-007) 100925146-100971049 protein_coding
ENST00000450763 (NPAS2-010) 100974866-100993527 protein_coding
ENST00000451740 (NPAS2-005) 100925162-100937842 protein_coding
ENST00000471974 (NPAS2-009) 100974803-100982636 processed_transcript
ENST00000474550 (NPAS2-002) 100970601-100996055 retained_intron
ENST00000486017 (NPAS2-008) 100925146-100964176 processed_transcript
ENST00000490052 (NPAS2-011) 100994443-100996055 processed_transcript
ENST00000492373 (NPAS2-006) 100934111-100964918 processed_transcript
ENST00000495559 (NPAS2-003) 100988310-100996822 retained_intron
ENSG00000227259 (HMGN2P22)
high mobility group nucleosomal binding domain 2 pseudogene 22 		ENST00000427588 (HMGN2P22-001) 100591150-100591324 processed_pseudogene
ENSG00000232034 (AC092168.2)
 ENST00000430586 (AC092168.2-001) 100822661-100847220 sense_intronic
ENSG00000234169 (AC092168.3)
 ENST00000414965 (AC092168.3-001) 100669892-100676038 lincRNA
ENSG00000234988 (AC068538.4)
 ENST00000414647 (AC068538.4-001) 100607028-100609351 lincRNA
ENST00000424342 (AC068538.4-002) 100607244-100609358 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004HH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026078-ENSMUSG00000026077 CGP 10090 1:38987814-39363234
GeneTranscriptPositionBiotype
ENSMUSG00000026077 (Npas2)
neuronal PAS domain protein 2 		ENSMUST00000056815 (Npas2-001) 39194212-39363234 protein_coding
ENSMUST00000172825 (Npas2-003) 39341555-39345466 processed_transcript
ENSMUST00000173050 (Npas2-002) 39193731-39287615 protein_coding
ENSMUSG00000026078 (Pdcl3)
phosducin-like 3 		ENSMUST00000027247 (Pdcl3-201) 38987814-38997236 protein_coding
ENSMUSG00000092553 (Gm20428)
predicted gene 20428 		ENSMUST00000174365 (Gm20428-001) 39276283-39276565 processed_pseudogene
ENSMUSG00000092563 (Gm3617)
predicted gene 3617 		ENSMUST00000173076 (Gm3617-001) 39314899-39315453 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HH_0001ENSG00000115539ENST00000264254ENST00000416255ENST00000450127ENSG00000170485ENST00000335681ENST00000427413ENST00000433408ENST00000448812ENST00000450763ENST00000451740ENST00000471974ENST00000474550ENST00000486017ENST00000490052ENST00000492373ENST00000495559ENSG00000227259ENST00000427588ENSG00000232034ENST00000430586ENSG00000234169ENST00000414965ENSG00000234988ENST00000414647ENST00000424342CIL_0004HH_0002ENSMUSG00000026077ENSMUST00000056815ENSMUST00000172825ENSMUST00000173050ENSMUSG00000026078ENSMUST00000027247ENSMUSG00000092553ENSMUST00000174365ENSMUSG00000092563ENSMUST00000173076
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HH_0001ENSG00000115539ENST00000264254ENST00000416255ENST00000450127ENSG00000170485ENST00000335681ENSG00000227259ENST00000427588ENSG00000232034ENST00000430586ENSG00000234169ENST00000414965ENSG00000234988ENST00000414647ENST00000424342CIL_0004HH_0002ENSMUSG00000026077ENSMUST00000056815ENSMUST00000173050ENSMUSG00000026078ENSMUST00000027247ENSMUSG00000092553ENSMUST00000174365ENSMUSG00000092563ENSMUST00000173076
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115539 ENST00000264254 6.193±0.00 12.946±0.00 1.029±0.00 3.530±0.29 6.199±2.63 8.383±5.53 3.498±2.09 5.158±3.83 5.570±3.45 2.206±1.25 5.098±2.78 21.712±23.17 18.546±8.68 21.672±6.77
ENST00000416255 3.100±0.00 N/A N/A 1.861±0.00 N/A N/A 1.831±0.00 N/A N/A N/A N/A N/A N/A 7.746±0.00
ENST00000450127 N/A N/A 2.794±0.00 N/A N/A 1.785±0.00 1.064±0.00 0.460±0.00 N/A 1.253±0.00 N/A N/A N/A N/A
ENSG00000170485 ENST00000335681 N/A N/A N/A N/A N/A N/A 7.886±0.00 9.618±0.00 6.721±0.00 N/A N/A N/A N/A N/A
ENST00000427413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227259 ENST00000427588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A
ENSG00000232034 ENST00000430586 0.108±0.00 0.331±0.00 N/A 0.135±0.00 0.109±0.00 0.286±0.05 N/A N/A 0.501±0.34 0.063±0.00 N/A 0.751±0.91 0.050±0.00 0.327±0.00
ENSG00000234169 ENST00000414965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.655±0.11
ENSG00000234988 ENST00000414647 N/A N/A N/A N/A N/A N/A N/A 0.567±0.00 N/A N/A N/A N/A N/A 0.666±0.24
ENST00000424342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026077 ENSMUST00000056815 0.494±0.00 3.565±1.24 0.391±0.00 0.548±0.39 2.530±0.18 14.082±1.78 N/A N/A 0.446±0.46 1.293±0.00 0.051±0.01 3.158±1.27 N/A 0.376±0.11
ENSMUST00000172825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173050 N/A 2.643±0.00 N/A 25.950±0.00 N/A N/A N/A N/A N/A N/A N/A 4.113±0.00 8.269±6.55 N/A
ENSMUSG00000026078 ENSMUST00000027247 12.737±3.65 11.041±0.80 33.396±9.45 9.953±2.03 8.508±1.30 17.113±1.87 10.901±1.09 13.765±0.78 8.708±3.43 17.476±1.19 13.875±4.25 14.685±6.26 29.774±14.83 2.800±0.65
ENSMUSG00000092553 ENSMUST00000174365 0.298±0.00 N/A N/A N/A N/A 0.543±0.01 N/A N/A N/A 0.496±0.17 N/A 1.307±0.00 N/A N/A
ENSMUSG00000092563 ENSMUST00000173076 0.146±0.00 N/A 0.182±0.10 0.299±0.00 N/A 0.266±0.00 N/A N/A 0.060±0.06 0.133±0.00 N/A 0.079±0.00 0.070±0.03 N/A

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