C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: postmeiotic segregation increased 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027267 Pms1-001 ENSMUSG00000026098 10090 - 1:53189187-53297018 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027267 0.336±0.18 0.336±0.02 0.868±0.01 1.011±0.27 0.387±0.13 0.371±0.10 0.279±0.08 0.385±0.10 1.107±0.88 0.398±0.16 0.417±0.13 0.648±0.37 1.469±0.73 0.301±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W3 CIL_0001W3_0002 CGP 1:53189187-53310309

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 IBA single-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IBA ATP catabolic process
GO:0006298 IMP mismatch repair
GO:0016887 IBA ATPase activity
GO:0030983 IEA mismatched DNA binding
GO:0032389 IBA MutLalpha complex
GO:0042493 IEA response to drug

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342075 PMS1-005 nonsense_mediated_decay Homo_sapiens 0 1812
ENST00000374826 PMS1-007 protein_coding Homo_sapiens 0 470
ENST00000409593 PMS1-011 protein_coding Homo_sapiens 0 647
ENST00000409823 PMS1-003 protein_coding Homo_sapiens 0 1552
ENST00000409985 PMS1-004 protein_coding Homo_sapiens 0 473
ENST00000418224 PMS1-201 protein_coding Homo_sapiens 0 797
ENST00000420421 PMS1-015 protein_coding Homo_sapiens 0 248
ENST00000421722 PMS1-012 processed_transcript Homo_sapiens 0 647
ENST00000424059 PMS1-009 processed_transcript Homo_sapiens 0 797
ENST00000424307 PMS1-006 protein_coding Homo_sapiens 0 1380
ENST00000424766 PMS1-014 protein_coding Homo_sapiens 0 612
ENST00000432292 PMS1-202 protein_coding Homo_sapiens 0 1810
ENST00000441310 PMS1-001 protein_coding Homo_sapiens 0 2276
ENST00000447232 PMS1-010 protein_coding Homo_sapiens 0 1363
ENST00000447734 PMS1-008 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000450931 PMS1-002 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000452382 PMS1-016 protein_coding Homo_sapiens 0 717
ENST00000483293 PMS1-017 processed_transcript Homo_sapiens 0 531
ENST00000618056 PMS1-203 protein_coding Homo_sapiens 0 612
ENST00000624204 PMS1-204 protein_coding Homo_sapiens 0 1812

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