C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027302 Ptpn18-002 ENSMUSG00000026126 10090 + 1:34459765-34473784 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027302 3.807±1.62 1.680±0.41 4.750±0.67 0.578±0.01 13.192±2.15 50.349±11.89 0.560±0.16 4.788±1.13 1.917±1.30 11.688±0.66 0.677±0.67 5.996±2.21 1.943±2.55 0.520±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J6 CIL_0001J6_0002 CGP 1:34439851-34475733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004726 IDA non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000175756 PTPN18-001 protein_coding Homo_sapiens 0 1035
ENST00000347849 PTPN18-002 protein_coding Homo_sapiens 0 686
ENST00000409022 PTPN18-003 protein_coding Homo_sapiens 0 510
ENST00000428843 PTPN18-006 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000462996 PTPN18-011 retained_intron Homo_sapiens 0 351
ENST00000464576 PTPN18-015 retained_intron Homo_sapiens 1e-32 143
ENST00000483617 PTPN18-007 retained_intron Homo_sapiens 0 278
ENST00000489215 PTPN18-005 retained_intron Homo_sapiens 0 278
ENST00000490137 PTPN18-016 retained_intron Homo_sapiens 3e-34 148
ENST00000490812 PTPN18-010 retained_intron Homo_sapiens 0 224
ENST00000495400 PTPN18-009 retained_intron Homo_sapiens 0 307

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