C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, non-receptor type 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026126 Ptpn18 10090 + 1:34459762-34475733 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027302 Ptpn18-002 34459765-34473784 protein_coding
  ENSMUST00000185610 Ptpn18-006 34459762-34461056 retained_intron
  ENSMUST00000186252 Ptpn18-007 34463271-34466866 retained_intron
  ENSMUST00000188019 Ptpn18-008 34474499-34475733 processed_transcript
  ENSMUST00000188884 Ptpn18-005 34459792-34470324 retained_intron
  ENSMUST00000188972 Ptpn18-001 34472736-34475733 protein_coding
  ENSMUST00000190122 Ptpn18-004 34459777-34471917 protein_coding
  ENSMUST00000191357 Ptpn18-003 34468834-34470434 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027302ENSMUST00000186252ENSMUST00000188972ENSMUST00000190122ENSMUST00000191357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027302 3.807±1.62 1.680±0.41 4.750±0.67 0.578±0.01 13.192±2.15 50.349±11.89 0.560±0.16 4.788±1.13 1.917±1.30 11.688±0.66 0.677±0.67 5.996±2.21 1.943±2.55 0.520±0.00
ENSMUST00000186252 0.679±0.00 N/A N/A 0.095±0.00 1.137±0.00 N/A 0.167±0.02 1.015±0.25 N/A 2.179±0.12 0.078±0.03 0.302±0.13 0.067±0.05 0.016±0.00
ENSMUST00000188972 17.999±2.36 5.350±2.90 12.269±0.00 4.455±1.13 78.551±28.64 N/A N/A N/A 9.104±8.78 23.901±2.00 1.218±0.28 18.899±3.56 3.126±0.76 N/A
ENSMUST00000190122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.696±0.00 N/A
ENSMUST00000191357 N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A 0.090±0.00 0.284±0.00 0.196±0.11 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J6 CIL_0001J6_0002 CGP 1:34439851-34475733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004726 IDA non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006308 ptpn18 protein tyrosine phosphatase, non-receptor type 18 protein_coding Danio_rerio
ENSG00000072135 PTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein_coding Homo_sapiens

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