C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 18 (brain-derived)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000175756 PTPN18-001 ENSG00000072135 9606 + 2:130356007-130375409 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000175756
Transcript ID Adipose Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000175756 4.217±0.00 0.883±0.00 2.208±0.00 0.140±0.00 2.847±1.27 3.020±0.00 4.825±3.20 6.682±1.03 1.824±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J6 CIL_0001J6_0001 CGP 2:130342225-130375409

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0004726 IEA non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006470 TAS:IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027302 Ptpn18-002 protein_coding Mus_musculus 0 1035
ENSMUST00000190122 Ptpn18-004 protein_coding Mus_musculus 0 787
ENSMUST00000188884 Ptpn18-005 retained_intron Mus_musculus 0 444

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