C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027303 Imp4-001 ENSMUSG00000026127 10090 + 1:34439851-34449356 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027303
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027303 7.805±1.31 8.777±0.68 4.373±0.32 4.342±2.35 7.396±1.67 7.187±0.95 3.131±0.49 6.820±1.29 5.873±1.39 8.212±1.01 1.354±0.26 10.635±3.69 4.881±2.15 3.387±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J7 CIL_0001J7_0002 CGP 1:34436670-34449356
CIL_0001J6 CIL_0001J6_0002 CGP 1:34439851-34475733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISA RNA binding
GO:0005515 IEA protein binding
GO:0005730 ISS nucleolus
GO:0006364 TAS rRNA processing
GO:0030519 ISA snoRNP binding
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259239 IMP4-001 protein_coding Homo_sapiens 0 1031
ENST00000409649 IMP4-010 protein_coding Homo_sapiens 0 891
ENST00000409935 IMP4-002 protein_coding Homo_sapiens 0 896
ENST00000428740 IMP4-012 protein_coding Homo_sapiens 0 959
ENST00000456713 IMP4-013 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000460766 IMP4-004 retained_intron Homo_sapiens 0 1020
ENST00000462392 IMP4-003 retained_intron Homo_sapiens 0 477
ENST00000464432 IMP4-005 retained_intron Homo_sapiens 0 351
ENST00000470672 IMP4-007 retained_intron Homo_sapiens 0 213
ENST00000473689 IMP4-006 retained_intron Homo_sapiens 0 488
ENST00000477375 IMP4-008 retained_intron Homo_sapiens 0 477
ENST00000490895 IMP4-009 retained_intron Homo_sapiens 0 340
ENST00000495606 IMP4-011 retained_intron Homo_sapiens 0 213

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