C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ArfGAP 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316999 SMAP1-004 ENSG00000112305 9606 + 6:70667776-70861166 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverOvaryPlacentaTestisENST00000316999
Transcript ID Adrenal Breast Heart Kidney Liver Ovary Placenta Testis
ENST00000316999 1.625±0.00 1.272±0.48 1.255±0.82 1.421±0.39 0.698±0.00 2.559±1.01 2.596±0.58 3.868±0.26

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0032312 IEA regulation of ARF GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027339 Smap1-001 protein_coding Mus_musculus 0 2612
ENSMUST00000129254 Smap1-003 protein_coding Mus_musculus 0 1609
ENSMUST00000149737 Smap1-002 processed_transcript Mus_musculus 0 1548
ENSMUST00000133398 Smap1-004 retained_intron Mus_musculus 0 998
ENSMUST00000063663 B3gat2-001 protein_coding Mus_musculus 0 961
ENSMUST00000148710 Smap1-007 processed_transcript Mus_musculus 0 874
ENSMUST00000141330 Smap1-005 processed_transcript Mus_musculus 0 568

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