C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ArfGAP 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370455 SMAP1-005 ENSG00000112305 9606 + 6:70667776-70862015 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverMuscleOvaryPlacentaENST00000370455
Transcript ID Colon Heart Liver Muscle Ovary Placenta
ENST00000370455 1.343±0.65 1.539±0.00 0.378±0.00 2.052±1.55 3.624±0.00 1.067±0.46

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0030276 IEA clathrin binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0045648 IEA positive regulation of erythrocyte differentiation
GO:2000369 IEA regulation of clathrin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027339 Smap1-001 protein_coding Mus_musculus 0 1853
ENSMUST00000141330 Smap1-005 processed_transcript Mus_musculus 0 1177
ENSMUST00000129254 Smap1-003 protein_coding Mus_musculus 0 1116
ENSMUST00000149737 Smap1-002 processed_transcript Mus_musculus 0 1075
ENSMUST00000063663 B3gat2-001 protein_coding Mus_musculus 0 1007
ENSMUST00000148710 Smap1-007 processed_transcript Mus_musculus 0 876
ENSMUST00000133398 Smap1-004 retained_intron Mus_musculus 0 505

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