C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integral membrane protein 2C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027425 Itm2c-001 ENSMUSG00000026223 10090 + 1:85894281-85908675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027425 127.425±53.07 283.614±29.68 77.417±0.46 68.132±16.01 91.003±7.46 65.310±9.24 41.213±2.00 69.201±4.31 25.663±6.06 120.678±5.09 14.573±0.86 169.031±48.30 32.266±14.02 15.130±8.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KY CIL_0004KY_0003 CGP 1:85793441-85908675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005515 IEA protein binding
GO:0005524 IDA ATP binding
GO:0005764 IDA lysosome
GO:0005794 IEA Golgi apparatus
GO:0005886 ISS plasma membrane
GO:0010977 IEA negative regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0048471 IEA perinuclear region of cytoplasm
GO:0070062 IEA extracellular vesicular exosome
GO:2001238 IMP positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326407 ITM2C-006 protein_coding Homo_sapiens 0 477
ENST00000326427 ITM2C-001 protein_coding Homo_sapiens 0 1088
ENST00000335005 ITM2C-002 protein_coding Homo_sapiens 0 830
ENST00000409704 ITM2C-008 protein_coding Homo_sapiens 0 966
ENST00000418408 ITM2C-009 protein_coding Homo_sapiens 0 516
ENST00000457215 ITM2C-004 protein_coding Homo_sapiens 0 590
ENST00000492029 ITM2C-005 processed_transcript Homo_sapiens 0 516
ENST00000541852 ITM2C-010 protein_coding Homo_sapiens 0 516
ENST00000543957 ITM2C-007 protein_coding Homo_sapiens 0 503
ENST00000620962 ITM2C-201 protein_coding Homo_sapiens 2e-32 143

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