C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004KY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043451-ENSDARG00000043448 CGP 7955 15:38614622-38666044
GeneTranscriptPositionBiotype
ENSDARG00000043448 (itm2ca)
integral membrane protein 2Ca 		ENSDART00000063783 (itm2ca-001) 38645531-38666044 protein_coding
ENSDARG00000043451 (cab39)
calcium binding protein 39 		ENSDART00000063786 (cab39-001) 38614622-38640091 protein_coding
ENSDART00000126317 (cab39-201) 38623215-38643423 protein_coding
ENSDARG00000096877 (cab39)
 ENSDART00000155839 (cab39-001) 38641893-38643424 lincRNA
CIL_0004KY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135932-ENSG00000135916 CGP 9606 2:230712845-230879248
GeneTranscriptPositionBiotype
ENSG00000135916 (ITM2C)
integral membrane protein 2C 		ENST00000326407 (ITM2C-006) 230864980-230879248 protein_coding
ENST00000326427 (ITM2C-001) 230864900-230879247 protein_coding
ENST00000335005 (ITM2C-002) 230864948-230879247 protein_coding
ENST00000409704 (ITM2C-008) 230865268-230878385 protein_coding
ENST00000418408 (ITM2C-009) 230865664-230876967 protein_coding
ENST00000457215 (ITM2C-004) 230864639-230876947 protein_coding
ENST00000492029 (ITM2C-005) 230873231-230876967 processed_transcript
ENST00000541852 (ITM2C-010) 230864654-230876967 protein_coding
ENST00000543957 (ITM2C-007) 230865248-230876960 protein_coding
ENST00000620962 (ITM2C-201) 230878218-230878718 protein_coding
ENSG00000135932 (CAB39)
calcium binding protein 39 		ENST00000258418 (CAB39-001) 230712845-230821075 protein_coding
ENST00000409788 (CAB39-002) 230713548-230818750 protein_coding
ENST00000410084 (CAB39-003) 230713548-230818704 protein_coding
ENST00000478152 (CAB39-004) 230790898-230799124 retained_intron
ENST00000484398 (CAB39-006) 230779006-230790978 processed_transcript
ENST00000493540 (CAB39-005) 230813983-230818182 retained_intron
ENST00000614925 (CAB39-201) 230759998-230819299 protein_coding
ENSG00000201044 (RNU6-268P)
RNA, U6 small nuclear 268, pseudogene 		ENST00000364174 (RNU6-268P-201) 230752141-230752247 snRNA
ENSG00000237758 (BANF1P3)
barrier to autointegration factor 1 pseudogene 3 		ENST00000412556 (BANF1P3-001) 230725143-230725403 processed_pseudogene
CIL_0004KY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036707-ENSMUSG00000026223 CGP 10090 1:85793441-85908675
GeneTranscriptPositionBiotype
ENSMUSG00000026223 (Itm2c)
integral membrane protein 2C 		ENSMUST00000027425 (Itm2c-001) 85894281-85908675 protein_coding
ENSMUST00000139837 (Itm2c-002) 85906161-85907791 retained_intron
ENSMUST00000185569 (Itm2c-003) 85894619-85908359 protein_coding
ENSMUSG00000036707 (Cab39)
calcium binding protein 39 		ENSMUST00000097666 (Cab39-002) 85794511-85850365 protein_coding
ENSMUST00000113360 (Cab39-001) 85793441-85851576 protein_coding
ENSMUST00000126962 (Cab39-004) 85793541-85818513 protein_coding
ENSMUST00000130754 (Cab39-003) 85794468-85837318 protein_coding
ENSMUST00000187623 (Cab39-005) 85843080-85846070 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KY_0001ENSDARG00000043448ENSDART00000063783ENSDARG00000043451ENSDART00000063786ENSDART00000126317ENSDARG00000096877ENSDART00000155839CIL_0004KY_0002ENSG00000135916ENST00000326407ENST00000326427ENST00000335005ENST00000409704ENST00000418408ENST00000457215ENST00000492029ENST00000541852ENST00000543957ENST00000620962ENSG00000135932ENST00000258418ENST00000409788ENST00000410084ENST00000478152ENST00000484398ENST00000493540ENST00000614925ENSG00000201044ENST00000364174ENSG00000237758ENST00000412556CIL_0004KY_0003ENSMUSG00000026223ENSMUST00000027425ENSMUST00000139837ENSMUST00000185569ENSMUSG00000036707ENSMUST00000097666ENSMUST00000113360ENSMUST00000126962ENSMUST00000130754ENSMUST00000187623
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KY_0001ENSDARG00000043448ENSDART00000063783ENSDARG00000043451ENSDART00000063786ENSDART00000126317ENSDARG00000096877ENSDART00000155839CIL_0004KY_0002ENSG00000135916ENST00000326407ENST00000326427ENST00000335005ENST00000409704ENST00000457215ENST00000492029ENST00000620962ENSG00000135932ENST00000258418ENST00000614925ENSG00000201044ENST00000364174ENSG00000237758ENST00000412556CIL_0004KY_0003ENSMUSG00000026223ENSMUST00000027425ENSMUST00000185569ENSMUSG00000036707ENSMUST00000097666ENSMUST00000113360ENSMUST00000130754
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043448 ENSDART00000063783 N/A N/A N/A 137.007±50.55 N/A N/A 0.491±0.21 2.000±0.88 0.116±0.00 N/A 4.199±0.00 N/A N/A N/A
ENSDARG00000043451 ENSDART00000063786 N/A N/A N/A 5.109±0.00 N/A N/A 0.818±0.00 1.764±0.00 0.087±0.00 N/A 0.671±0.00 N/A N/A N/A
ENSDART00000126317 N/A N/A N/A 3.954±0.00 N/A N/A 1.218±0.04 1.238±0.05 0.045±0.00 N/A 0.957±0.00 N/A N/A N/A
ENSDARG00000096877 ENSDART00000155839 N/A N/A N/A 8.548±3.01 N/A N/A 2.836±0.00 0.994±0.19 0.177±0.00 N/A 3.177±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135916 ENST00000326407 N/A N/A 2.404±0.00 121.166±0.00 N/A 96.713±0.00 N/A N/A N/A N/A N/A 11.581±0.00 N/A 8.455±0.00
ENST00000326427 22.657±0.00 90.591±0.00 5.998±0.00 211.561±163.48 24.508±4.15 66.785±12.53 7.526±6.20 89.639±0.00 13.094±0.48 35.920±0.00 3.321±3.08 53.855±37.47 123.981±30.65 40.902±0.00
ENST00000335005 N/A N/A N/A N/A N/A 81.099±0.00 N/A N/A N/A 15.459±0.00 N/A 23.304±9.37 43.823±0.00 6.979±0.00
ENST00000409704 N/A N/A 5.514±0.00 N/A N/A N/A 2.249±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000418408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457215 N/A N/A N/A N/A N/A N/A 0.938±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000492029 N/A N/A N/A N/A N/A 113.400±0.00 N/A 2.888±0.00 20.353±0.00 N/A 4.982±0.00 N/A N/A N/A
ENST00000541852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.805±0.00 N/A N/A N/A
ENSG00000135932 ENST00000258418 16.931±0.00 11.156±0.00 6.088±0.00 13.645±9.61 9.197±6.53 11.103±5.36 12.868±10.15 10.980±7.29 9.627±2.16 12.558±6.96 17.207±11.04 11.162±3.22 11.504±2.98 15.610±4.51
ENST00000409788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614925 N/A N/A 6.276±0.00 10.073±0.00 9.599±0.00 9.419±0.00 2.206±0.00 5.176±0.00 10.185±0.00 8.512±0.00 4.708±0.00 6.855±0.27 7.615±0.00 17.347±0.00
ENSG00000201044 ENST00000364174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.502±0.00 N/A N/A
ENSG00000237758 ENST00000412556 0.270±0.00 0.193±0.00 N/A 0.549±0.00 0.106±0.00 0.094±0.00 0.187±0.00 N/A N/A N/A 0.088±0.00 0.473±0.24 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026223 ENSMUST00000027425 127.425±53.07 283.614±29.68 77.417±0.46 68.132±16.01 91.003±7.46 65.310±9.24 41.213±2.00 69.201±4.31 25.663±6.06 120.678±5.09 14.573±0.86 169.031±48.30 32.266±14.02 15.130±8.00
ENSMUST00000139837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185569 N/A 102.613±22.37 N/A 205.380±0.00 N/A N/A N/A N/A N/A N/A 3.202±0.00 66.421±0.00 19.388±12.54 3.536±0.00
ENSMUSG00000036707 ENSMUST00000097666 5.691±0.65 N/A N/A N/A 4.923±0.42 N/A N/A 5.055±0.00 N/A 8.432±0.00 N/A N/A 12.168±1.49 13.818±3.62
ENSMUST00000113360 24.049±5.70 57.703±4.82 57.238±6.99 28.001±13.07 28.592±9.47 76.425±17.45 12.123±6.07 26.561±4.84 18.002±2.63 41.529±4.99 48.609±3.41 45.355±14.65 20.980±13.15 7.645±2.06
ENSMUST00000126962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130754 N/A N/A N/A 130.254±0.00 N/A N/A N/A N/A N/A N/A N/A 94.694±0.00 155.085±22.53 38.925±0.00
ENSMUST00000187623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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