C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integral membrane protein 2C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326427 ITM2C-001 ENSG00000135916 9606 + 2:230864900-230879247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326427
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326427 22.657±0.00 90.591±0.00 5.998±0.00 211.561±163.48 24.508±4.15 66.785±12.53 7.526±6.20 89.639±0.00 13.094±0.48 35.920±0.00 3.321±3.08 53.855±37.47 123.981±30.65 40.902±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KY CIL_0004KY_0002 CGP 2:230712845-230879248

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IPI beta-amyloid binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005764 ISS lysosome
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0010977 IDA negative regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0030182 ISS neuron differentiation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome
GO:2001238 IEA positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027425 Itm2c-001 protein_coding Mus_musculus 0 1088
ENSMUST00000139837 Itm2c-002 retained_intron Mus_musculus 0 568
ENSMUST00000185569 Itm2c-003 protein_coding Mus_musculus 0 477

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