C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027878 Prrx1-001 ENSMUSG00000026586 10090 - 1:163245119-163313710 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027878 6.379±2.75 1.253±0.40 2.572±0.03 1.723±0.07 5.816±2.97 0.097±0.08 3.840±2.11 0.814±0.19 0.054±0.03 1.630±0.45 4.403±2.85 5.996±2.15 0.456±0.54 0.137±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0030326 IGI embryonic limb morphogenesis
GO:0042472 IGI inner ear morphogenesis
GO:0042474 IMP middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239461 PRRX1-002 protein_coding Homo_sapiens 0 1718
ENST00000367760 PRRX1-001 protein_coding Homo_sapiens 0 1851
ENST00000476867 PRRX1-003 processed_transcript Homo_sapiens 0 809
ENST00000485529 PRRX1-007 processed_transcript Homo_sapiens 0 337
ENST00000495280 PRRX1-004 processed_transcript Homo_sapiens 0 337
ENST00000496573 PRRX1-006 processed_transcript Homo_sapiens 0 339
ENST00000497230 PRRX1-005 protein_coding Homo_sapiens 0 1090
ENST00000553786 PRRX1-008 processed_transcript Homo_sapiens 0 425

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