C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239461 PRRX1-002 ENSG00000116132 9606 + 1:170663906-170739419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000239461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000239461 22.856±0.00 10.345±0.00 0.089±0.00 0.784±0.05 8.924±3.66 1.899±0.00 3.287±0.24 0.288±0.25 3.656±0.00 7.583±4.32 7.206±5.36 4.704±5.44 2.735±2.35 8.879±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000284 CIL_000284_0002 CGP 1:170532129-170739419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0030326 IEA embryonic limb morphogenesis
GO:0042472 IEA inner ear morphogenesis
GO:0042474 IEA middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0048701 IEA embryonic cranial skeleton morphogenesis
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048844 IEA artery morphogenesis
GO:0051216 IEA cartilage development
GO:0060021 IEA palate development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027878 Prrx1-001 protein_coding Mus_musculus 0 1718
ENSMUST00000174397 Prrx1-004 protein_coding Mus_musculus 0 1090
ENSMUST00000075805 Prrx1-002 protein_coding Mus_musculus 0 1090
ENSMUST00000183691 Prrx1-005 processed_transcript Mus_musculus 0 632
ENSMUST00000174098 Prrx1-003 retained_intron Mus_musculus 0 595
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 6e-21 108
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 6e-21 108
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 6e-21 108
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 6e-21 108

Loading