C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000497230 PRRX1-005 ENSG00000116132 9606 + 1:170663937-170729021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungOvaryPlacentaENST00000497230
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000497230 0.076±0.00 0.423±0.00 1.315±0.00 0.724±0.00 0.133±0.05 0.012±0.00 3.910±0.00 3.705±0.00 0.938±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000284 CIL_000284_0002 CGP 1:170532129-170739419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174397 Prrx1-004 protein_coding Mus_musculus 0 1356
ENSMUST00000027878 Prrx1-001 protein_coding Mus_musculus 0 1090
ENSMUST00000075805 Prrx1-002 protein_coding Mus_musculus 0 1090
ENSMUST00000174098 Prrx1-003 retained_intron Mus_musculus 0 595
ENSMUST00000183691 Prrx1-005 processed_transcript Mus_musculus 0 496

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