C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: torsin family 1, member B (torsin B)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259339 TOR1B-001 ENSG00000136816 9606 + 9:129803153-129811281 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259339 6.289±0.00 6.280±0.00 1.501±0.00 1.294±0.21 4.839±0.07 3.490±0.83 2.201±1.73 3.714±0.11 4.309±2.39 2.594±1.38 2.232±1.48 5.302±2.53 10.746±0.61 8.869±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UB CIL_0005UB_0001 CGP 9:129738331-129811281
CIL_0002LZ CIL_0002LZ_0003 CGP 9:129803153-129824134

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005635 IDA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0005783 IDA:IEA endoplasmic reticulum
GO:0005788 IDA endoplasmic reticulum lumen
GO:0006200 IDA ATP catabolic process
GO:0006986 TAS response to unfolded protein
GO:0007029 IDA endoplasmic reticulum organization
GO:0016020 IEA membrane
GO:0016887 IDA ATPase activity
GO:0051085 IEA chaperone mediated protein folding requiring cofactor
GO:0051260 IDA protein homooligomerization
GO:0070062 IDA extracellular vesicular exosome
GO:0071763 IEA nuclear membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028199 Tor1b-001 protein_coding Mus_musculus 0 1094
ENSMUST00000156711 Tor1b-002 nonsense_mediated_decay Mus_musculus 0 963
ENSMUST00000155213 Tor1b-005 retained_intron Mus_musculus 0 828
ENSMUST00000135507 Tor1b-004 nonsense_mediated_decay Mus_musculus 0 664
ENSMUST00000133544 Tor1b-003 retained_intron Mus_musculus 0 616

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