C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosome recycling factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028250 Mrrf-001 ENSMUSG00000026887 10090 + 2:36136389-36190647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028250
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028250 11.238±1.15 16.757±1.84 7.496±0.12 5.968±2.19 10.054±4.13 5.227±0.73 11.062±1.28 11.324±1.35 7.406±2.34 11.690±1.40 4.706±0.23 11.648±4.53 7.095±1.79 15.998±8.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006N8 CIL_0006N8_0002 CGP 2:36081953-36136773
CIL_0006N9 CIL_0006N9_0002 CGP 2:36116079-36190647
CIL_0006NA CIL_0006NA_0002 CGP 2:36136389-36252272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0006412 IEA translation
GO:0032790 IEA ribosome disassembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297908 MRRF-201 protein_coding Homo_sapiens 0 588
ENST00000344641 MRRF-001 protein_coding Homo_sapiens 0 974
ENST00000373723 MRRF-010 protein_coding Homo_sapiens 0 651
ENST00000373728 MRRF-003 retained_intron Homo_sapiens 4e-18 97
ENST00000373729 MRRF-004 protein_coding Homo_sapiens 0 865
ENST00000394315 MRRF-202 protein_coding Homo_sapiens 0 638
ENST00000435941 MRRFP1-001 processed_pseudogene Homo_sapiens 0 804
ENST00000467864 MRRF-009 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000470366 MRRF-008 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000489572 MRRF-002 nonsense_mediated_decay Homo_sapiens 0 429

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