C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006NA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148187-ENSG00000095303 CGP 9606 9:122264603-122395703
GeneTranscriptPositionBiotype
ENSG00000095303 (PTGS1)
prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 		ENST00000223423 (PTGS1-002) 122371080-122393178 protein_coding
ENST00000362012 (PTGS1-001) 122371080-122395703 protein_coding
ENST00000373698 (PTGS1-201) 122375322-122395702 protein_coding
ENST00000426608 (PTGS1-003) 122371188-122383532 protein_coding
ENST00000540753 (PTGS1-202) 122370530-122395702 protein_coding
ENST00000614910 (PTGS1-203) 122371005-122395702 protein_coding
ENST00000619306 (PTGS1-204) 122371085-122395702 protein_coding
ENSG00000119446 (RBM18)
RNA binding motif protein 18 		ENST00000417201 (RBM18-001) 122237624-122264839 protein_coding
ENST00000483428 (RBM18-002) 122241758-122264794 processed_transcript
ENST00000491850 (RBM18-003) 122241670-122247546 processed_transcript
ENSG00000148187 (MRRF)
mitochondrial ribosome recycling factor 		ENST00000297908 (MRRF-201) 122264603-122323461 protein_coding
ENST00000344641 (MRRF-001) 122264656-122323464 protein_coding
ENST00000373723 (MRRF-010) 122264895-122323092 protein_coding
ENST00000373724 (MRRF-006) 122265462-122285946 processed_transcript
ENST00000373727 (MRRF-005) 122264914-122285394 retained_intron
ENST00000373728 (MRRF-003) 122264914-122291798 retained_intron
ENST00000373729 (MRRF-004) 122264904-122322724 protein_coding
ENST00000394315 (MRRF-202) 122270864-122323461 protein_coding
ENST00000441707 (MRRF-007) 122264887-122285287 protein_coding
ENST00000467864 (MRRF-009) 122270808-122313330 nonsense_mediated_decay
ENST00000470366 (MRRF-008) 122264926-122322678 nonsense_mediated_decay
ENST00000489572 (MRRF-002) 122270848-122323088 nonsense_mediated_decay
ENSG00000269970 (RP11-498E2.9)
 ENST00000602325 (RP11-498E2.9-001) 122372605-122372825 sense_intronic
ENSG00000269979 (RP11-498E2.7)
 ENST00000602625 (RP11-498E2.7-001) 122324608-122325315 lincRNA
ENSG00000270102 (RP11-498E2.8)
 ENST00000602692 (RP11-498E2.8-001) 122330867-122331343 lincRNA
CIL_0006NA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026887-ENSMUSG00000047250 CGP 10090 2:36136389-36252272
GeneTranscriptPositionBiotype
ENSMUSG00000026887 (Mrrf)
mitochondrial ribosome recycling factor 		ENSMUST00000028250 (Mrrf-001) 36136389-36190647 protein_coding
ENSMUST00000132042 (Mrrf-002) 36136634-36147919 nonsense_mediated_decay
ENSMUST00000162490 (Mrrf-003) 36147103-36159665 processed_transcript
ENSMUSG00000026889 (Rbm18)
RNA binding motif protein 18 		ENSMUST00000028251 (Rbm18-001) 36116079-36136773 protein_coding
ENSMUST00000122456 (Rbm18-004) 36117626-36136611 protein_coding
ENSMUST00000134668 (Rbm18-003) 36117768-36136615 nonsense_mediated_decay
ENSMUST00000142809 (Rbm18-002) 36126220-36136611 retained_intron
ENSMUSG00000047250 (Ptgs1)
prostaglandin-endoperoxide synthase 1 		ENSMUST00000062069 (Ptgs1-001) 36230426-36252272 protein_coding
ENSMUST00000133777 (Ptgs1-005) 36242475-36245205 processed_transcript
ENSMUST00000144319 (Ptgs1-002) 36230556-36238063 processed_transcript
ENSMUST00000149930 (Ptgs1-003) 36236249-36240742 processed_transcript
ENSMUST00000151351 (Ptgs1-004) 36240713-36241468 processed_transcript
ENSMUSG00000081496 (Gm13428)
predicted gene 13428 		ENSMUST00000117540 (Gm13428-001) 36137339-36137703 processed_pseudogene
ENSMUSG00000085141 (Gm13429)
predicted gene 13429 		ENSMUST00000123224 (Gm13429-001) 36202314-36204259 processed_transcript
ENSMUST00000128242 (Gm13429-003) 36210772-36212902 processed_transcript
ENSMUST00000138755 (Gm13429-002) 36202822-36212903 processed_transcript
ENSMUSG00000087187 (Gm13431)
predicted gene 13431 		ENSMUST00000122948 (Gm13431-001) 36216825-36222934 lincRNA
ENSMUST00000129699 (Gm13431-003) 36220490-36222865 lincRNA
ENSMUST00000147012 (Gm13431-002) 36216777-36217502 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006NA_0001ENSG00000095303ENST00000223423ENST00000362012ENST00000373698ENST00000426608ENST00000540753ENST00000614910ENST00000619306ENSG00000119446ENST00000417201ENST00000483428ENST00000491850ENSG00000148187ENST00000297908ENST00000344641ENST00000373723ENST00000373724ENST00000373727ENST00000373728ENST00000373729ENST00000394315ENST00000441707ENST00000467864ENST00000470366ENST00000489572ENSG00000269970ENST00000602325ENSG00000269979ENST00000602625ENSG00000270102ENST00000602692CIL_0006NA_0002ENSMUSG00000026887ENSMUST00000028250ENSMUST00000132042ENSMUST00000162490ENSMUSG00000026889ENSMUST00000028251ENSMUST00000122456ENSMUST00000134668ENSMUST00000142809ENSMUSG00000047250ENSMUST00000062069ENSMUST00000133777ENSMUST00000144319ENSMUST00000149930ENSMUST00000151351ENSMUSG00000081496ENSMUST00000117540ENSMUSG00000085141ENSMUST00000123224ENSMUST00000128242ENSMUST00000138755ENSMUSG00000087187ENSMUST00000122948ENSMUST00000129699ENSMUST00000147012
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006NA_0001ENSG00000095303ENST00000223423ENST00000362012ENST00000373698ENST00000540753ENST00000614910ENSG00000119446ENST00000417201ENST00000483428ENSG00000148187ENST00000297908ENST00000344641ENST00000373728ENST00000373729ENST00000394315ENST00000467864ENST00000470366ENSG00000269970ENST00000602325ENSG00000269979ENST00000602625ENSG00000270102ENST00000602692CIL_0006NA_0002ENSMUSG00000026887ENSMUST00000028250ENSMUSG00000026889ENSMUST00000028251ENSMUSG00000047250ENSMUST00000062069ENSMUST00000133777ENSMUST00000144319ENSMUST00000149930ENSMUSG00000081496ENSMUST00000117540ENSMUSG00000085141ENSMUST00000123224ENSMUST00000128242ENSMUST00000138755ENSMUSG00000087187ENSMUST00000122948ENSMUST00000129699ENSMUST00000147012
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000095303 ENST00000223423 1.304±0.00 2.955±0.00 N/A N/A 1.289±0.15 5.594±0.00 0.765±0.04 2.031±1.72 19.410±19.13 2.191±0.49 0.151±0.00 1.704±0.46 1.690±0.55 1.065±0.00
ENST00000362012 N/A N/A 0.527±0.00 0.720±0.00 N/A 11.886±0.00 0.583±0.19 0.826±0.00 34.500±0.00 1.073±0.14 N/A 1.013±0.34 0.661±0.06 0.660±0.36
ENST00000373698 0.299±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540753 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.948±0.00 N/A N/A N/A N/A
ENST00000614910 0.659±0.00 4.508±0.00 N/A 1.007±0.69 0.242±0.00 5.220±0.00 0.537±0.00 0.838±0.54 0.318±0.00 1.294±0.00 0.421±0.00 1.322±0.00 0.886±0.06 N/A
ENST00000619306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000119446 ENST00000417201 2.610±0.00 N/A 1.366±0.00 6.466±0.00 1.508±0.00 0.913±0.00 2.009±0.59 1.800±0.00 3.129±1.29 2.590±0.00 2.868±1.20 2.862±0.99 3.875±0.37 2.410±0.00
ENST00000483428 N/A N/A 3.310±0.00 N/A N/A N/A N/A N/A N/A N/A 4.768±0.00 N/A N/A N/A
ENST00000491850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148187 ENST00000297908 N/A N/A N/A N/A 4.700±0.00 6.525±0.00 N/A N/A 6.085±0.00 5.943±0.00 N/A 13.962±0.00 4.396±0.00 8.695±0.00
ENST00000344641 6.711±0.00 4.480±0.00 N/A N/A N/A N/A 3.205±1.61 10.280±0.00 N/A N/A 7.523±0.00 5.654±1.39 2.557±0.00 N/A
ENST00000373723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373728 N/A N/A N/A N/A 2.145±0.00 2.988±0.00 N/A N/A 4.862±0.00 N/A N/A 5.339±0.00 N/A N/A
ENST00000373729 N/A N/A N/A N/A N/A 5.241±0.00 N/A 2.540±0.00 N/A N/A N/A 17.103±0.00 11.640±0.00 21.695±0.00
ENST00000394315 N/A N/A 2.667±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467864 N/A N/A N/A N/A 4.176±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.375±0.00
ENST00000489572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000269970 ENST00000602325 N/A 0.249±0.00 N/A N/A N/A 0.670±0.00 0.528±0.00 N/A 1.920±0.00 1.806±0.00 N/A 2.321±0.00 0.454±0.00 0.158±0.00
ENSG00000269979 ENST00000602625 2.509±0.00 1.780±0.00 N/A 0.880±0.00 0.601±0.00 0.952±0.05 0.418±0.20 0.831±0.15 0.544±0.02 0.829±0.00 0.470±0.00 0.563±0.40 0.284±0.03 0.537±0.17
ENSG00000270102 ENST00000602692 1.132±0.00 1.348±0.00 N/A 0.430±0.00 1.211±0.00 0.444±0.00 0.286±0.00 0.965±0.00 0.784±0.00 0.145±0.00 0.793±0.00 1.004±0.71 0.312±0.12 0.385±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026887 ENSMUST00000028250 11.238±1.15 16.757±1.84 7.496±0.12 5.968±2.19 10.054±4.13 5.227±0.73 11.062±1.28 11.324±1.35 7.406±2.34 11.690±1.40 4.706±0.23 11.648±4.53 7.095±1.79 15.998±8.47
ENSMUST00000132042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026889 ENSMUST00000028251 8.567±2.61 3.597±0.06 14.316±1.37 20.864±6.32 6.555±3.22 3.873±0.36 7.598±2.69 7.177±0.60 5.269±2.43 7.524±2.19 10.315±0.45 8.849±1.86 13.954±0.90 4.264±1.35
ENSMUST00000122456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047250 ENSMUST00000062069 7.631±1.44 5.138±1.91 20.297±1.22 0.865±0.24 3.622±1.21 10.109±1.63 3.438±0.37 6.667±0.82 5.103±2.45 18.638±6.22 0.805±0.11 4.516±1.09 3.232±2.94 0.912±1.01
ENSMUST00000133777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.322±0.00
ENSMUST00000144319 N/A 4.509±0.72 N/A N/A 2.609±0.00 7.714±0.00 N/A N/A N/A N/A N/A 2.744±0.00 N/A N/A
ENSMUST00000149930 N/A N/A N/A N/A 4.724±0.13 9.860±0.00 N/A N/A N/A N/A N/A 4.003±0.00 N/A 0.342±0.00
ENSMUST00000151351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081496 ENSMUST00000117540 0.385±0.19 N/A 0.037±0.00 0.040±0.00 0.219±0.00 N/A 0.340±0.00 0.189±0.00 0.049±0.00 N/A N/A 0.654±0.44 0.074±0.02 2.091±0.69
ENSMUSG00000085141 ENSMUST00000123224 0.548±0.38 0.107±0.01 0.044±0.03 N/A 0.229±0.10 N/A 0.150±0.05 N/A 0.083±0.03 0.119±0.04 0.084±0.00 0.250±0.00 0.020±0.00 0.054±0.00
ENSMUST00000128242 0.073±0.00 0.044±0.00 0.053±0.00 N/A 0.156±0.07 N/A N/A 0.061±0.01 0.043±0.01 N/A N/A 0.162±0.05 0.168±0.04 0.048±0.00
ENSMUST00000138755 0.042±0.00 N/A 0.032±0.00 N/A N/A 0.200±0.00 0.153±0.06 0.103±0.00 0.120±0.04 N/A 0.127±0.03 N/A 0.177±0.14 0.135±0.00
ENSMUSG00000087187 ENSMUST00000122948 0.605±0.25 0.266±0.02 0.969±0.13 0.224±0.00 0.965±0.61 0.245±0.01 0.403±0.21 0.406±0.25 0.436±0.30 0.820±0.14 N/A 0.806±0.70 0.728±0.55 0.312±0.06
ENSMUST00000129699 N/A N/A 0.625±0.23 0.262±0.00 0.401±0.00 0.356±0.00 N/A 0.321±0.07 0.231±0.00 0.362±0.00 0.147±0.03 0.745±0.44 0.366±0.23 0.521±0.01
ENSMUST00000147012 0.691±0.24 0.336±0.11 1.201±0.46 0.135±0.03 0.566±0.13 0.241±0.02 N/A 0.448±0.24 0.349±0.11 0.533±0.38 0.220±0.00 0.353±0.22 0.334±0.10 0.319±0.26

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