C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat, SAM and U-box domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028368 Wdsub1-001 ENSMUSG00000026988 10090 - 2:59852364-59882584 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028368 3.852±0.78 2.890±0.17 9.478±2.17 1.388±0.14 3.071±0.71 3.678±0.54 2.611±0.65 3.344±0.82 1.521±0.46 4.518±1.12 2.556±0.94 5.642±1.48 1.804±0.85 1.740±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083G CIL_00083G_0002 VISTA 2:59262344-59863132
CIL_0007X8 CIL_0007X8_0002 VISTA 2:59297936-59901449
CIL_0008PS CIL_0008PS_0002 VISTA 2:59368906-59972125
CIL_0008P7 CIL_0008P7_0002 VISTA 2:59528773-60129361
CIL_0005U3 CIL_0005U3_0002 CGP 2:59612042-59882591
CIL_0005U2 CIL_0005U2_0002 CGP 2:59852364-60209839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016567 IEA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358147 WDSUB1-004 protein_coding Homo_sapiens 0 427
ENST00000359774 WDSUB1-001 protein_coding Homo_sapiens 0 1057
ENST00000392796 WDSUB1-002 protein_coding Homo_sapiens 0 1057
ENST00000409124 WDSUB1-003 protein_coding Homo_sapiens 0 809
ENST00000409990 WDSUB1-005 protein_coding Homo_sapiens 0 1057

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