C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat, SAM and U-box domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026988 Wdsub1 10090 - 2:59852364-59882591 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028368 Wdsub1-001 59852364-59882584 protein_coding
  ENSMUST00000102751 Wdsub1-011 59855187-59882547 protein_coding
  ENSMUST00000127004 Wdsub1-010 59861333-59861680 processed_transcript
  ENSMUST00000128671 Wdsub1-005 59876668-59882574 protein_coding
  ENSMUST00000131285 Wdsub1-006 59878332-59882591 processed_transcript
  ENSMUST00000133809 Wdsub1-002 59870329-59878164 protein_coding
  ENSMUST00000138519 Wdsub1-008 59861688-59863561 processed_transcript
  ENSMUST00000139689 Wdsub1-007 59861561-59876842 protein_coding
  ENSMUST00000140475 Wdsub1-004 59876667-59882586 protein_coding
  ENSMUST00000140852 Wdsub1-012 59873035-59878346 processed_transcript
  ENSMUST00000144343 Wdsub1-003 59862673-59882557 processed_transcript
  ENSMUST00000144823 Wdsub1-009 59861324-59862726 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028368ENSMUST00000102751ENSMUST00000127004ENSMUST00000128671ENSMUST00000131285ENSMUST00000139689ENSMUST00000140475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028368 3.852±0.78 2.890±0.17 9.478±2.17 1.388±0.14 3.071±0.71 3.678±0.54 2.611±0.65 3.344±0.82 1.521±0.46 4.518±1.12 2.556±0.94 5.642±1.48 1.804±0.85 1.740±0.47
ENSMUST00000102751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.624±0.00
ENSMUST00000127004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.910±0.00
ENSMUST00000128671 7.145±1.27 6.603±1.67 N/A N/A 4.659±1.12 4.893±0.52 3.411±0.44 3.763±0.57 1.492±0.31 6.191±1.24 4.111±0.00 5.393±0.00 N/A 2.736±0.69
ENSMUST00000131285 N/A 17.972±4.66 N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.179±0.00 N/A N/A
ENSMUST00000139689 10.831±1.83 N/A 10.580±1.93 N/A 7.448±1.36 N/A 4.088±0.06 6.330±0.69 1.257±0.14 N/A N/A 11.301±1.03 2.579±1.06 3.994±1.00
ENSMUST00000140475 15.048±1.70 16.986±5.05 11.544±0.00 3.813±0.00 17.990±3.03 15.341±1.31 8.459±0.68 11.505±4.20 2.639±1.04 18.856±3.05 N/A 27.672±3.16 3.587±0.35 6.473±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083G CIL_00083G_0002 VISTA 2:59262344-59863132
CIL_0007X8 CIL_0007X8_0002 VISTA 2:59297936-59901449
CIL_0008PS CIL_0008PS_0002 VISTA 2:59368906-59972125
CIL_0008P7 CIL_0008P7_0002 VISTA 2:59528773-60129361
CIL_0005U3 CIL_0005U3_0002 CGP 2:59612042-59882591
CIL_0005U2 CIL_0005U2_0002 CGP 2:59852364-60209839

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016567 IEA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090418 wdsub1 WD repeat, sterile alpha motif and U-box domain containing 1 protein_coding Danio_rerio
ENSG00000196151 WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1 protein_coding Homo_sapiens

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