C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein associated with topoisomerase II homolog 2 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028665 Patl2-001 ENSMUSG00000027233 10090 - 2:122120108-122186189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028665
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028665 0.041±0.01 0.003±0.00 0.009±0.00 0.030±0.00 0.021±0.00 0.020±0.01 0.031±0.01 0.031±0.01 0.017±0.00 1.054±0.47 1.267±0.48 0.269±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DJ CIL_0004DJ_0002 CGP 2:122053520-122186189
CIL_0004DK CIL_0004DK_0002 CGP 2:122120108-122186189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0002151 ISO G-quadruplex RNA binding
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008266 ISO poly(U) RNA binding
GO:0010607 IDA negative regulation of cytoplasmic mRNA processing body assembly
GO:0017148 ISS negative regulation of translation
GO:0030371 ISO translation repressor activity
GO:0030529 ISS ribonucleoprotein complex
GO:0034046 ISO poly(G) binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000434130 PATL2-201 protein_coding Homo_sapiens 0 1033
ENST00000560775 PATL2-001 protein_coding Homo_sapiens 0 1033
ENST00000560780 PATL2-003 protein_coding Homo_sapiens 0 1005

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