C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 23 (nucleobase transporters), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028815 Slc23a2-001 ENSMUSG00000027340 10090 - 2:132052496-132145108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028815 7.927±2.59 42.629±4.15 6.960±1.84 10.289±1.62 8.189±3.49 20.267±2.76 4.278±0.27 7.001±0.65 3.242±2.52 36.129±11.77 1.603±0.76 32.210±12.98 8.053±3.78 1.506±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S5 CIL_0004S5_0002 CGP 2:131989415-132145108
CIL_0003LV CIL_0003LV_0002 CGP 2:132052496-132247807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006979 IEA response to oxidative stress
GO:0008520 ISA L-ascorbate:sodium symporter activity
GO:0009925 IDA basal plasma membrane
GO:0015229 IMP L-ascorbic acid transporter activity
GO:0015882 IMP L-ascorbic acid transport
GO:0016323 IEA basolateral plasma membrane
GO:0016324 IEA apical plasma membrane
GO:0019852 IEA L-ascorbic acid metabolic process
GO:0035461 ISA vitamin transmembrane transport
GO:0070890 IEA sodium-dependent L-ascorbate transmembrane transporter activity
GO:0070904 IEA transepithelial L-ascorbic acid transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338244 SLC23A2-002 protein_coding Homo_sapiens 0 2501
ENST00000379333 SLC23A2-001 protein_coding Homo_sapiens 0 2501
ENST00000423430 SLC23A2-004 protein_coding Homo_sapiens 0 970
ENST00000468355 SLC23A2-003 processed_transcript Homo_sapiens 0 1478
ENST00000496331 SLC23A2-005 processed_transcript Homo_sapiens 0 806

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