C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003LV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000089057-ENSG00000089063 CGP 9606 20:4852356-5113103
GeneTranscriptPositionBiotype
ENSG00000089057 (SLC23A2)
solute carrier family 23 (ascorbic acid transporter), member 2 		ENST00000338244 (SLC23A2-002) 4852356-5001499 protein_coding
ENST00000379333 (SLC23A2-001) 4852356-5010293 protein_coding
ENST00000423430 (SLC23A2-004) 4859367-4899647 protein_coding
ENST00000468355 (SLC23A2-003) 4869588-5010270 processed_transcript
ENST00000496331 (SLC23A2-005) 4873877-4885991 processed_transcript
ENSG00000089063 (TMEM230)
transmembrane protein 230 		ENST00000202834 (TMEM230-006) 5099840-5113103 protein_coding
ENST00000342308 (TMEM230-003) 5099840-5113087 protein_coding
ENST00000379276 (TMEM230-004) 5106188-5112753 protein_coding
ENST00000379277 (TMEM230-010) 5099840-5112904 protein_coding
ENST00000379279 (TMEM230-008) 5099840-5113049 protein_coding
ENST00000379283 (TMEM230-001) 5099840-5113050 protein_coding
ENST00000379286 (TMEM230-007) 5099840-5113042 protein_coding
ENST00000379299 (TMEM230-005) 5099840-5113042 protein_coding
ENST00000492419 (TMEM230-009) 5099840-5112969 processed_transcript
ENST00000612323 (TMEM230-011) 5068483-5113087 protein_coding
ENST00000615008 (TMEM230-012) 5068232-5112790 protein_coding
ENSG00000252096 (SNORA31)
Small nucleolar RNA SNORA31 		ENST00000516287 (SNORA31.1-207) 4868984-4869118 snoRNA
ENSG00000276768 (RP5-1116H23.5)
 ENST00000617644 (RP5-1116H23.5-001) 5049857-5050321 lincRNA
ENSG00000277087 (RP5-1116H23.6)
 ENST00000618494 (RP5-1116H23.6-001) 5045761-5046276 lincRNA
ENSG00000277425 (RP5-1116H23.3)
 ENST00000616569 (RP5-1116H23.3-001) 5066082-5068154 lincRNA
ENSG00000278816 (RP5-1116H23.4)
 ENST00000620848 (RP5-1116H23.4-001) 5061037-5061340 lincRNA
CIL_0003LV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027340-ENSMUSG00000027341 CGP 10090 2:132052496-132247807
GeneTranscriptPositionBiotype
ENSMUSG00000027340 (Slc23a2)
solute carrier family 23 (nucleobase transporters), member 2 		ENSMUST00000028815 (Slc23a2-001) 132052496-132145108 protein_coding
ENSMUST00000127724 (Slc23a2-002) 132074834-132145108 processed_transcript
ENSMUST00000128899 (Slc23a2-003) 132094224-132111448 protein_coding
ENSMUST00000133407 (Slc23a2-004) 132089109-132094629 processed_transcript
ENSMUST00000137910 (Slc23a2-006) 132060708-132067040 processed_transcript
ENSMUST00000148749 (Slc23a2-007) 132055414-132056685 processed_transcript
ENSMUST00000154009 (Slc23a2-005) 132075606-132078008 processed_transcript
ENSMUSG00000027341 (Tmem230)
transmembrane protein 230 		ENSMUST00000028816 (Tmem230-001) 132239492-132247807 protein_coding
ENSMUST00000110163 (Tmem230-003) 132239492-132247769 protein_coding
ENSMUST00000110164 (Tmem230-005) 132239492-132247654 protein_coding
ENSMUST00000141813 (Tmem230-004) 132245852-132247756 retained_intron
ENSMUST00000143782 (Tmem230-002) 132245320-132247759 processed_transcript
ENSMUST00000180286 (Tmem230-201) 132239494-132247788 protein_coding
ENSMUSG00000082990 (Gm14052)
predicted gene 14052 		ENSMUST00000121434 (Gm14052-001) 132099869-132100899 processed_pseudogene
ENSMUSG00000086756 (Gm14051)
predicted gene 14051 		ENSMUST00000131603 (Gm14051-001) 132144533-132220250 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LV_0001ENSG00000089057ENST00000338244ENST00000379333ENST00000423430ENST00000468355ENST00000496331ENSG00000089063ENST00000202834ENST00000342308ENST00000379276ENST00000379277ENST00000379279ENST00000379283ENST00000379286ENST00000379299ENST00000492419ENST00000612323ENST00000615008ENSG00000252096ENST00000516287ENSG00000276768ENST00000617644ENSG00000277087ENST00000618494ENSG00000277425ENST00000616569ENSG00000278816ENST00000620848CIL_0003LV_0002ENSMUSG00000027340ENSMUST00000028815ENSMUST00000127724ENSMUST00000128899ENSMUST00000133407ENSMUST00000137910ENSMUST00000148749ENSMUST00000154009ENSMUSG00000027341ENSMUST00000028816ENSMUST00000110163ENSMUST00000110164ENSMUST00000141813ENSMUST00000143782ENSMUST00000180286ENSMUSG00000082990ENSMUST00000121434ENSMUSG00000086756ENSMUST00000131603
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LV_0001ENSG00000089057ENST00000338244ENST00000379333ENSG00000089063ENST00000202834ENST00000342308ENST00000379279ENST00000379299ENSG00000252096ENST00000516287ENSG00000276768ENST00000617644ENSG00000277087ENST00000618494ENSG00000277425ENST00000616569ENSG00000278816ENST00000620848CIL_0003LV_0002ENSMUSG00000027340ENSMUST00000028815ENSMUSG00000027341ENSMUST00000028816ENSMUST00000110163ENSMUST00000110164ENSMUST00000143782ENSMUST00000180286ENSMUSG00000082990ENSMUST00000121434ENSMUSG00000086756ENSMUST00000131603
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089057 ENST00000338244 2.218±0.00 3.303±0.00 N/A 7.782±2.82 1.993±0.00 1.151±0.00 1.664±0.00 3.551±1.74 2.929±0.68 1.995±0.62 N/A 4.403±3.34 2.470±1.09 3.232±2.00
ENST00000379333 N/A N/A 1.686±0.00 N/A N/A N/A 0.281±0.00 N/A N/A N/A 0.341±0.00 N/A N/A N/A
ENST00000423430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000089063 ENST00000202834 39.347±0.00 42.755±0.00 7.101±0.00 22.449±3.68 44.500±30.90 22.065±9.93 14.328±8.65 36.415±8.68 20.207±5.65 17.692±7.27 18.464±5.98 42.465±18.16 45.582±4.44 28.123±5.98
ENST00000342308 N/A N/A N/A 5.084±0.00 N/A N/A 1.685±0.00 N/A 4.176±0.00 2.543±0.00 N/A N/A N/A 8.995±0.00
ENST00000379276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379279 N/A N/A N/A 7.068±0.00 N/A 7.386±5.41 4.483±0.00 N/A N/A N/A 4.548±0.00 N/A 8.004±0.00 5.085±0.00
ENST00000379283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379299 N/A N/A N/A N/A 3.393±0.00 N/A 2.090±1.13 9.037±0.00 4.899±0.00 8.541±0.00 N/A 9.947±2.45 N/A N/A
ENST00000492419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252096 ENST00000516287 N/A N/A N/A N/A N/A N/A 0.486±0.00 N/A N/A N/A N/A 5.894±0.00 N/A N/A
ENSG00000276768 ENST00000617644 0.174±0.00 0.333±0.00 N/A 0.773±0.00 0.323±0.00 N/A N/A N/A N/A 0.235±0.02 N/A 0.256±0.04 0.065±0.00 0.323±0.02
ENSG00000277087 ENST00000618494 0.129±0.00 0.180±0.00 N/A 0.104±0.00 0.112±0.00 0.136±0.00 0.037±0.00 N/A N/A 0.090±0.00 0.086±0.00 0.132±0.07 N/A 0.133±0.00
ENSG00000277425 ENST00000616569 0.169±0.00 0.271±0.00 N/A 0.236±0.03 0.161±0.00 N/A 0.225±0.00 0.187±0.00 0.137±0.00 N/A 0.238±0.00 0.154±0.08 0.106±0.00 0.519±0.16
ENSG00000278816 ENST00000620848 0.068±0.00 0.890±0.00 N/A 0.368±0.14 0.706±0.52 N/A 0.326±0.00 0.095±0.00 0.309±0.00 1.197±0.97 N/A 0.430±0.28 N/A 0.398±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027340 ENSMUST00000028815 7.927±2.59 42.629±4.15 6.960±1.84 10.289±1.62 8.189±3.49 20.267±2.76 4.278±0.27 7.001±0.65 3.242±2.52 36.129±11.77 1.603±0.76 32.210±12.98 8.053±3.78 1.506±0.62
ENSMUST00000127724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027341 ENSMUST00000028816 16.645±3.17 20.789±3.80 14.792±1.36 8.387±5.71 15.945±4.35 14.246±5.43 10.437±1.62 13.499±0.99 9.406±1.48 14.269±1.11 11.238±0.70 21.289±9.72 7.386±5.52 22.048±10.79
ENSMUST00000110163 4.428±1.08 8.549±1.41 2.870±0.00 1.170±0.70 5.547±0.23 4.663±0.64 2.243±0.40 3.691±0.65 3.618±0.91 3.792±0.33 2.355±0.35 6.580±3.80 2.510±0.70 N/A
ENSMUST00000110164 2.225±0.00 N/A 1.328±0.13 1.098±0.58 1.406±0.16 N/A N/A N/A 1.523±0.30 2.058±0.00 N/A 1.079±0.29 0.627±0.17 0.184±0.00
ENSMUST00000141813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143782 N/A 47.995±21.05 N/A N/A 30.741±3.51 25.809±9.11 N/A 17.804±2.44 9.324±1.35 23.515±4.47 N/A 73.323±12.76 N/A 63.867±6.33
ENSMUST00000180286 N/A N/A N/A N/A 3.760±0.00 N/A N/A N/A N/A N/A N/A 4.323±3.12 2.021±0.34 0.695±0.00
ENSMUSG00000082990 ENSMUST00000121434 0.514±0.34 1.037±0.57 0.394±0.11 0.532±0.34 1.034±0.39 1.493±1.05 0.333±0.12 0.299±0.11 0.101±0.05 1.490±0.33 N/A 0.864±0.59 0.313±0.16 0.175±0.10
ENSMUSG00000086756 ENSMUST00000131603 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.733±0.56

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