C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 20, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028880 Slc20a1-001 ENSMUSG00000027397 10090 + 2:129198764-129211616 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028880
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028880 5.747±0.41 3.349±1.04 3.015±0.04 12.724±3.19 8.780±1.57 63.203±20.61 2.341±1.20 4.547±0.92 16.248±14.84 7.737±0.81 1.528±0.40 8.247±1.71 29.791±14.66 3.281±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018Z CIL_00018Z_0002 CGP 2:129129700-129211616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005315 IEA inorganic phosphate transmembrane transporter activity
GO:0005316 IEA high affinity inorganic phosphate:sodium symporter activity
GO:0005886 IDA plasma membrane
GO:0006814 IEA sodium ion transport
GO:0007165 IEA signal transduction
GO:0016021 IEA integral component of membrane
GO:0035435 IEA phosphate ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272542 SLC20A1-001 protein_coding Homo_sapiens 0 3371
ENST00000413135 SLC20A1-009 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000433924 SLC20A1-008 protein_coding Homo_sapiens 0 435
ENST00000456264 SLC20A1-006 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000480984 SLC20A1-010 processed_transcript Homo_sapiens 0 760
ENST00000490674 SLC20A1-003 retained_intron Homo_sapiens 0 948
ENST00000498224 SLC20A1-004 retained_intron Homo_sapiens 0 828

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