C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NSFL1 (p97) cofactor (p47)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028949 Nsfl1c-002 ENSMUSG00000027455 10090 + 2:151494293-151511305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000028949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000028949 12.446±2.14 7.424±2.83 19.483±3.39 21.379±2.42 12.521±4.23 12.573±1.81 11.775±4.47 28.219±1.89 25.595±10.89 13.844±2.27 15.835±7.05 43.759±19.26 10.965±2.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005694 IEA chromosome
GO:0005794 IEA Golgi apparatus
GO:0008289 IEA lipid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216879 NSFL1C-002 protein_coding Homo_sapiens 0 1766
ENST00000353088 NSFL1C-004 protein_coding Homo_sapiens 0 966
ENST00000381653 NSFL1C-003 nonsense_mediated_decay Homo_sapiens 0 1096
ENST00000461211 NSFL1C-006 processed_transcript Homo_sapiens 0 1376
ENST00000470376 NSFL1C-001 nonsense_mediated_decay Homo_sapiens 0 771
ENST00000476071 NSFL1C-010 protein_coding Homo_sapiens 0 1744
ENST00000478168 NSFL1C-008 retained_intron Homo_sapiens 0 244
ENST00000487086 NSFL1C-009 retained_intron Homo_sapiens 0 388
ENST00000489203 NSFL1C-007 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000519856 RP11-697N18.3-001 processed_pseudogene Homo_sapiens 0 1171
ENST00000553571 NSFL1C-013 processed_transcript Homo_sapiens 0 276
ENST00000555359 NSFL1C-011 retained_intron Homo_sapiens 1e-28 130
ENST00000555568 NSFL1C-012 nonsense_mediated_decay Homo_sapiens 0 1068
ENST00000555944 NSFL1C-005 nonsense_mediated_decay Homo_sapiens 0 1221

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