C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029414 Ssr3-001 ENSMUSG00000027828 10090 - 3:65379655-65392623 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029414
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029414 68.569±11.25 77.800±6.85 75.786±6.02 36.414±18.22 62.899±5.03 56.481±7.10 41.011±2.59 54.870±4.23 75.914±7.98 66.705±0.96 47.975±1.84 123.543±36.15 79.885±42.38 10.393±4.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000667 CIL_000667_0004 CGP 3:65109384-65392623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005784 IEA Sec61 translocon complex
GO:0006613 IEA cotranslational protein targeting to membrane
GO:0030176 IEA integral component of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265044 SSR3-001 protein_coding Homo_sapiens 0 1482
ENST00000448345 RP11-386I14.3-001 processed_pseudogene Homo_sapiens 0 713
ENST00000463503 SSR3-005 protein_coding Homo_sapiens 0 662
ENST00000464138 SSR3-009 processed_transcript Homo_sapiens 0 427
ENST00000467733 SSR3-004 retained_intron Homo_sapiens 0 693
ENST00000467789 SSR3-002 protein_coding Homo_sapiens 0 706
ENST00000476217 SSR3-003 protein_coding Homo_sapiens 0 941
ENST00000478842 SSR3-007 processed_transcript Homo_sapiens 0 660
ENST00000496050 SSR3-006 protein_coding Homo_sapiens 0 619
ENST00000498205 SSR3-008 retained_intron Homo_sapiens 0 667

Loading