C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029476 Sec22b-001 ENSMUSG00000027879 10090 + 3:97901190-97923276 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029476 8.017±1.49 5.314±1.81 15.417±2.25 8.753±4.03 5.086±0.17 5.474±0.84 3.843±0.29 5.509±0.55 8.462±1.71 9.196±0.55 3.396±0.28 6.196±1.63 11.361±3.51 5.567±0.47

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0005515 IEA protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IDA vesicle-mediated transport
GO:0019905 IEA syntaxin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128991 sec22bb-201 protein_coding Danio_rerio 0 422
ENSDART00000136856 sec22bb-001 protein_coding Danio_rerio 0 422
ENSDART00000139837 sec22bb-002 protein_coding Danio_rerio 5e-25 121
ENST00000493753 MX2-012 retained_intron Homo_sapiens 0.000001 58
ENST00000578049 SEC22B-001 protein_coding Homo_sapiens 0 1301
ENST00000616023 CH17-478G19.2-001 unprocessed_pseudogene Homo_sapiens 0 821
ENST00000618406 CH17-385C13.2-001 unprocessed_pseudogene Homo_sapiens 0 634
ENST00000618538 SEC22B-002 protein_coding Homo_sapiens 1e-39 169
ENST00000618702 SEC22B-001 unprocessed_pseudogene Homo_sapiens 0 815

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