C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578049 SEC22B-001 ENSG00000265808 9606 - 1:120150898-120176515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000578049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000578049 7.781±0.00 6.049±0.00 4.032±0.00 6.343±0.24 8.023±2.92 5.707±0.29 2.709±0.67 8.069±1.24 6.829±0.81 7.248±0.28 3.410±2.65 5.486±2.22 7.154±3.71 5.874±0.77

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006810 IEA transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019905 IEA syntaxin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029476 Sec22b-001 protein_coding Mus_musculus 0 1301
ENSMUST00000130778 Sec22b-002 nonsense_mediated_decay Mus_musculus 0 1280
ENSMUST00000122288 Sec22b-003 protein_coding Mus_musculus 0 736
ENSDART00000128991 sec22bb-201 protein_coding Danio_rerio 0 372
ENSDART00000136856 sec22bb-001 protein_coding Danio_rerio 0 372
ENSMUST00000130620 Sec22b-004 retained_intron Mus_musculus 0 289
ENSDART00000139837 sec22bb-002 protein_coding Danio_rerio 6e-18 99

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