C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027879 Sec22b 10090 + 3:97901190-97923276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029476 Sec22b-001 97901190-97923276 protein_coding
  ENSMUST00000122288 Sec22b-003 97901227-97915211 protein_coding
  ENSMUST00000130620 Sec22b-004 97901225-97907664 retained_intron
  ENSMUST00000130778 Sec22b-002 97901216-97921851 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029476ENSMUST00000122288ENSMUST00000130620ENSMUST00000130778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029476 8.017±1.49 5.314±1.81 15.417±2.25 8.753±4.03 5.086±0.17 5.474±0.84 3.843±0.29 5.509±0.55 8.462±1.71 9.196±0.55 3.396±0.28 6.196±1.63 11.361±3.51 5.567±0.47
ENSMUST00000122288 N/A N/A N/A N/A 3.429±0.00 3.167±0.12 N/A N/A N/A N/A N/A 6.823±3.18 N/A N/A
ENSMUST00000130620 N/A 22.186±4.03 N/A N/A 12.957±3.64 15.963±4.43 N/A 5.933±0.67 N/A 10.948±0.00 N/A 21.063±4.10 N/A N/A
ENSMUST00000130778 17.441±1.36 13.150±1.33 21.675±2.71 11.908±3.84 12.901±6.33 6.194±0.52 8.124±1.05 11.370±2.90 13.122±4.31 11.016±1.20 4.504±0.43 10.399±7.09 49.659±4.83 7.143±0.75

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0005515 IEA protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IDA vesicle-mediated transport
GO:0019905 IEA syntaxin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030108 sec22ba SEC22 vesicle trafficking protein homolog B (S. cerevisiae), a protein_coding Danio_rerio
ENSDARG00000093866 sec22bb SEC22 vesicle trafficking protein homolog B (S. cerevisiae), b protein_coding Danio_rerio
ENSG00000265808 SEC22B SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein_coding Homo_sapiens

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