C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurogenin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029587 Neurog2-001 ENSMUSG00000027967 10090 + 3:127633136-127635631 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverPlacentaTestisENSMUST00000029587
Transcript ID Adrenal Bladder Brain Breast Colon Liver Placenta Testis
ENSMUST00000029587 0.019±0.00 0.009±0.00 19.206±16.76 0.021±0.00 0.027±0.00 0.085±0.11 2.696±3.29 0.059±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0002 VISTA 3:127326841-127927904
CIL_00080F CIL_00080F_0002 VISTA 3:127613726-128215301
CIL_0007P9 CIL_0007P9_0002 UCNEbase 3:127625906-129219414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007411 IMP axon guidance
GO:0021954 IGI central nervous system neuron development
GO:0022008 IDA neurogenesis
GO:0030182 IMP neuron differentiation
GO:0030900 IMP forebrain development
GO:0043565 IDA sequence-specific DNA binding
GO:0045165 IGI cell fate commitment
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0048469 IMP cell maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242462 NEUROG3-001 protein_coding Homo_sapiens 0 189
ENST00000313341 NEUROG2-001 protein_coding Homo_sapiens 0 1146

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