| Source ID |
Type |
Tax ID |
Position |
| PITX2 |
UCNEbase |
7955 |
14:37181031-37434360  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007P9_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000073331' => 'alpha-kinase 1',
'ENSG00000138660' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSG00000145365' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSG00000164093' => 'paired-like homeodomain 2',
'ENSG00000174749' => 'chromosome 4 open reading frame 32',
'ENSG00000178403' => 'neurogenin 2',
'ENSG00000200963' => 'RNA, U6 small nuclear 289, pseudogene',
'ENSG00000215961' => 'microRNA 297',
'ENSG00000240459' => null,
'ENSG00000241722' => null,
'ENSG00000243280' => null,
'ENSG00000248432' => null,
'ENSG00000248656' => null,
'ENSG00000248697' => 'TOX high mobility group box family member 4 pseudogene 1',
'ENSG00000249509' => null,
'ENSG00000249519' => 'long intergenic non-protein coding RNA 1438',
'ENSG00000249815' => null,
'ENSG00000250307' => 'tubulin beta 8 class VIII pseudogene 3',
'ENSG00000250556' => 'coiled-coil domain containing 34 pseudogene 1',
'ENSG00000250855' => null,
'ENSG00000251312' => null,
'ENSG00000251441' => 'regulator of telomere elongation helicase 1 pseudogene 1',
'ENSG00000251483' => 'lysophospholipase I pseudogene 2',
'ENSG00000251808' => null,
'ENSG00000260526' => null,
'ENSG00000272567' => null,
'ENSMUSG00000027967' => 'neurogenin 2',
'ENSMUSG00000028023' => 'paired-like homeodomain transcription factor 2',
'ENSMUSG00000028028' => 'alpha-kinase 1',
'ENSMUSG00000046688' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSMUSG00000050549' => 'RIKEN cDNA 5730508B09 gene',
'ENSMUSG00000065248' => 'predicted gene, 22293',
'ENSMUSG00000074236' => 'predicted pseudogene 9387',
'ENSMUSG00000074237' => 'predicted gene 10650',
'ENSMUSG00000074238' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSMUSG00000088537' => 'predicted gene, 23279',
'ENSMUSG00000089988' => 'predicted gene 16238',
'ENSMUSG00000098515' => 'predicted gene 27195',
'ENSMUSG00000099640' => 'predicted gene 28543',
'ENSDARG00000088832' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000073331' => 'ALPK1',
'ENSG00000138660' => 'AP1AR',
'ENSG00000145365' => 'TIFA',
'ENSG00000164093' => 'PITX2',
'ENSG00000174749' => 'C4orf32',
'ENSG00000178403' => 'NEUROG2',
'ENSG00000200963' => 'RNU6-289P',
'ENSG00000215961' => 'MIR297',
'ENSG00000240459' => 'RP11-477G18.1',
'ENSG00000241722' => 'RP11-255I10.1',
'ENSG00000243280' => 'RP11-477G18.2',
'ENSG00000248432' => 'RP11-269F21.2',
'ENSG00000248656' => 'RP11-255I10.2',
'ENSG00000248697' => 'TOX4P1',
'ENSG00000249509' => 'RP11-402J6.1',
'ENSG00000249519' => 'LINC01438',
'ENSG00000249815' => 'RP11-269F21.3',
'ENSG00000250307' => 'TUBB8P3',
'ENSG00000250556' => 'CCDC34P1',
'ENSG00000250855' => 'RP11-269F21.1',
'ENSG00000251312' => 'AC004062.2',
'ENSG00000251441' => 'RTEL1P1',
'ENSG00000251483' => 'LYPLA1P2',
'ENSG00000251808' => 'AC024198.1',
'ENSG00000260526' => 'RP11-73K9.2',
'ENSG00000272567' => 'RP11-73K9.3',
'ENSMUSG00000027967' => 'Neurog2',
'ENSMUSG00000028023' => 'Pitx2',
'ENSMUSG00000028028' => 'Alpk1',
'ENSMUSG00000046688' => 'Tifa',
'ENSMUSG00000050549' => '5730508B09Rik',
'ENSMUSG00000065248' => 'Gm22293',
'ENSMUSG00000074236' => 'Gm9387',
'ENSMUSG00000074237' => 'Gm10650',
'ENSMUSG00000074238' => 'Ap1ar',
'ENSMUSG00000088537' => 'Gm23279',
'ENSMUSG00000089988' => 'Gm16238',
'ENSMUSG00000098515' => 'Gm27195',
'ENSMUSG00000099640' => 'RP23-386C15.1',
'ENSDARG00000088832' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 70 => 'Brain',
(int) 98 => 'Breast',
(int) 134 => 'Colon',
(int) 162 => 'Heart',
(int) 190 => 'Kidney',
(int) 216 => 'Liver',
(int) 246 => 'Lung',
(int) 275 => 'Muscle',
(int) 308 => 'Ovary',
(int) 347 => 'Placenta',
(int) 380 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 91,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000177648' => array(
'start' => '112297370',
'end' => '112441812',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-001'
),
'ENST00000426472' => array(
'start' => '112297396',
'end' => '112353012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-012'
),
'ENST00000458497' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-201'
),
'ENST00000502366' => array(
'start' => '112297379',
'end' => '112343584',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-009'
),
'ENST00000504176' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-202'
),
'ENST00000504488' => array(
'start' => '112297385',
'end' => '112316305',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-011'
),
'ENST00000504745' => array(
'start' => '112382504',
'end' => '112442620',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-007'
),
'ENST00000505127' => array(
'start' => '112297382',
'end' => '112441664',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-005'
),
'ENST00000505176' => array(
'start' => '112297369',
'end' => '112343276',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-010'
),
'ENST00000505912' => array(
'start' => '112410915',
'end' => '112415117',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-003'
),
'ENST00000508589' => array(
'start' => '112425051',
'end' => '112427649',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-015'
),
'ENST00000509209' => array(
'start' => '112423788',
'end' => '112425963',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-014'
),
'ENST00000509688' => array(
'start' => '112297391',
'end' => '112384846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-002'
),
'ENST00000509722' => array(
'start' => '112297380',
'end' => '112441371',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-008'
),
'ENST00000512847' => array(
'start' => '112426506',
'end' => '112428111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-016'
),
'ENST00000514594' => array(
'start' => '112285509',
'end' => '112315851',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-017'
),
'ENST00000515106' => array(
'start' => '112297401',
'end' => '112412445',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-013'
),
'ENST00000515330' => array(
'start' => '112297396',
'end' => '112425693',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-006'
),
'ENST00000274000' => array(
'start' => '112231737',
'end' => '112270047',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-001'
),
'ENST00000309703' => array(
'start' => '112231833',
'end' => '112269677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-002'
),
'ENST00000502954' => array(
'start' => '112231825',
'end' => '112254894',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-004'
),
'ENST00000506522' => array(
'start' => '112231889',
'end' => '112253311',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-005'
),
'ENST00000510527' => array(
'start' => '112231740',
'end' => '112265319',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-003'
),
'ENST00000512741' => array(
'start' => '112265052',
'end' => '112266830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-006'
),
'ENST00000361717' => array(
'start' => '112274542',
'end' => '112285903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-001'
),
'ENST00000500655' => array(
'start' => '112277759',
'end' => '112281773',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-002'
),
'ENST00000306732' => array(
'start' => '110617423',
'end' => '110623103',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-005'
),
'ENST00000354925' => array(
'start' => '110617426',
'end' => '110642006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-003'
),
'ENST00000355080' => array(
'start' => '110617423',
'end' => '110637352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-002'
),
'ENST00000394595' => array(
'start' => '110617436',
'end' => '110637026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-004'
),
'ENST00000394598' => array(
'start' => '110617423',
'end' => '110637020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-001'
),
'ENST00000511837' => array(
'start' => '110618209',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-006'
),
'ENST00000511990' => array(
'start' => '110618586',
'end' => '110642016',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-007'
),
'ENST00000556049' => array(
'start' => '110618465',
'end' => '110620716',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PITX2-008'
),
'ENST00000557119' => array(
'start' => '110620277',
'end' => '110623051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-010'
),
'ENST00000607868' => array(
'start' => '110617429',
'end' => '110618826',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PITX2-009'
),
'ENST00000613094' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-201'
),
'ENST00000614423' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-202'
),
'ENST00000616641' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-203'
),
'ENST00000309733' => array(
'start' => '112145397',
'end' => '112195256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C4orf32-001'
),
'ENST00000313341' => array(
'start' => '112513516',
'end' => '112516172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEUROG2-001'
),
'ENST00000364093' => array(
'start' => '111331412',
'end' => '111331518',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-289P-201'
),
'ENST00000401142' => array(
'start' => '110860582',
'end' => '110860647',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR297-201'
),
'ENST00000497190' => array(
'start' => '112116510',
'end' => '112116903',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.1-001'
),
'ENST00000491760' => array(
'start' => '111551854',
'end' => '111552173',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-255I10.1-001'
),
'ENST00000484625' => array(
'start' => '112171215',
'end' => '112171527',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.2-001'
),
'ENST00000508010' => array(
'start' => '111804418',
'end' => '111809694',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.2-001'
),
'ENST00000510034' => array(
'start' => '111640495',
'end' => '111648808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-255I10.2-001'
),
'ENST00000514955' => array(
'start' => '112455924',
'end' => '112457785',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TOX4P1-001'
),
'ENST00000504009' => array(
'start' => '112515431',
'end' => '112546881',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-002'
),
'ENST00000506057' => array(
'start' => '112515385',
'end' => '112518236',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-001'
),
'ENST00000512794' => array(
'start' => '110794403',
'end' => '110797344',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01438-001'
),
'ENST00000511219' => array(
'start' => '111826881',
'end' => '112072698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.3-001'
),
'ENST00000510182' => array(
'start' => '112077598',
'end' => '112078400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TUBB8P3-001'
),
'ENST00000507441' => array(
'start' => '112068010',
'end' => '112068526',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CCDC34P1-001'
),
'ENST00000506068' => array(
'start' => '111802801',
'end' => '111839886',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.1-001'
),
'ENST00000509926' => array(
'start' => '111063583',
'end' => '111064227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC004062.2-001'
),
'ENST00000504490' => array(
'start' => '112356135',
'end' => '112359819',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RTEL1P1-001'
),
'ENST00000513113' => array(
'start' => '110945109',
'end' => '110945799',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LYPLA1P2-001'
),
'ENST00000515999' => array(
'start' => '110853376',
'end' => '110853470',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024198.1-201'
),
'ENST00000562919' => array(
'start' => '112229561',
'end' => '112231596',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-73K9.2-001'
),
'ENST00000610220' => array(
'start' => '112272968',
'end' => '112273316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-73K9.3-001'
),
'ENSMUST00000029587' => array(
'start' => '127633136',
'end' => '127635631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Neurog2-001'
),
'ENSMUST00000029657' => array(
'start' => '129199922',
'end' => '129219578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-005'
),
'ENSMUST00000042587' => array(
'start' => '129213972',
'end' => '129219588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-003'
),
'ENSMUST00000106382' => array(
'start' => '129199926',
'end' => '129219591',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-001'
),
'ENSMUST00000172645' => array(
'start' => '129203947',
'end' => '129218897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-006'
),
'ENSMUST00000173645' => array(
'start' => '129199969',
'end' => '129204577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-008'
),
'ENSMUST00000174623' => array(
'start' => '129214275',
'end' => '129216624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-004'
),
'ENSMUST00000174661' => array(
'start' => '129199878',
'end' => '129219590',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-002'
),
'ENSMUST00000187145' => array(
'start' => '129213932',
'end' => '129216774',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pitx2-007'
),
'ENSMUST00000029662' => array(
'start' => '127670932',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-001'
),
'ENSMUST00000159720' => array(
'start' => '127679520',
'end' => '127686340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-005'
),
'ENSMUST00000160586' => array(
'start' => '127670399',
'end' => '127780527',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Alpk1-003'
),
'ENSMUST00000161239' => array(
'start' => '127724285',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-004'
),
'ENSMUST00000162859' => array(
'start' => '127754850',
'end' => '127780490',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Alpk1-002'
),
'ENSMUST00000054483' => array(
'start' => '127789872',
'end' => '127798392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-001'
),
'ENSMUST00000163775' => array(
'start' => '127789914',
'end' => '127797950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-004'
),
'ENSMUST00000164447' => array(
'start' => '127790657',
'end' => '127797949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-002'
),
'ENSMUST00000166778' => array(
'start' => '127789916',
'end' => '127832135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tifa-005'
),
'ENSMUST00000171621' => array(
'start' => '127791381',
'end' => '127798388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-003'
),
'ENSMUST00000057198' => array(
'start' => '127869688',
'end' => '127896323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '5730508B09Rik-201'
),
'ENSMUST00000083314' => array(
'start' => '128540372',
'end' => '128540480',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22293-201'
),
'ENSMUST00000098624' => array(
'start' => '128953782',
'end' => '128955098',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9387-201'
),
'ENSMUST00000098625' => array(
'start' => '128038694',
'end' => '128040661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10650-201'
),
'ENSMUST00000051737' => array(
'start' => '127807264',
'end' => '127837492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ap1ar-201'
),
'ENSMUST00000157912' => array(
'start' => '127731594',
'end' => '127731690',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm23279-201'
),
'ENSMUST00000159343' => array(
'start' => '127691935',
'end' => '127692522',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16238-001'
),
'ENSMUST00000184283' => array(
'start' => '129210006',
'end' => '129211500',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm27195-001'
),
'ENSMUST00000188986' => array(
'start' => '129067805',
'end' => '129070544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-386C15.1-001'
),
'ENSDART00000128470' => array(
'start' => '37422276',
'end' => '37422390',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1712-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
'ENSG00000073331' => array(
[maximum depth reached]
),
'ENSG00000138660' => array(
[maximum depth reached]
),
'ENSG00000145365' => array(
[maximum depth reached]
),
'ENSG00000164093' => array(
[maximum depth reached]
),
'ENSG00000174749' => array(
[maximum depth reached]
),
'ENSG00000178403' => array(
[maximum depth reached]
),
'ENSG00000240459' => array(
[maximum depth reached]
),
'ENSG00000241722' => array(
[maximum depth reached]
),
'ENSG00000243280' => array(
[maximum depth reached]
),
'ENSG00000248656' => array(
[maximum depth reached]
),
'ENSG00000248697' => array(
[maximum depth reached]
),
'ENSG00000249509' => array(
[maximum depth reached]
),
'ENSG00000249815' => array(
[maximum depth reached]
),
'ENSG00000250556' => array(
[maximum depth reached]
),
'ENSG00000250855' => array(
[maximum depth reached]
),
'ENSG00000251312' => array(
[maximum depth reached]
),
'ENSG00000251441' => array(
[maximum depth reached]
),
'ENSG00000251483' => array(
[maximum depth reached]
),
'ENSG00000260526' => array(
[maximum depth reached]
),
'ENSG00000272567' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Placenta',
(int) 4 => 'Adrenal',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Kidney',
(int) 22 => 'Ovary',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Breast',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Heart',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Breast',
(int) 97 => 'Colon',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Muscle',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Brain',
(int) 105 => 'Colon',
(int) 106 => 'Ovary',
(int) 107 => 'Testis',
(int) 108 => 'Adipose',
(int) 109 => 'Breast',
(int) 110 => 'Heart',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Placenta',
(int) 114 => 'Testis',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Breast',
(int) 138 => 'Heart',
(int) 139 => 'Kidney',
(int) 140 => 'Lung',
(int) 141 => 'Muscle',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Muscle',
(int) 148 => 'Ovary',
(int) 149 => 'Adipose',
(int) 150 => 'Adrenal',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Colon',
(int) 164 => 'Kidney',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Heart',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Adipose',
(int) 171 => 'Brain',
(int) 172 => 'Breast',
(int) 173 => 'Colon',
(int) 174 => 'Heart',
(int) 175 => 'Muscle',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Lung',
(int) 179 => 'Adrenal',
(int) 180 => 'Brain',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Testis',
(int) 184 => 'Ovary',
(int) 185 => 'Adipose',
(int) 186 => 'Adrenal',
(int) 187 => 'Bladder',
(int) 188 => 'Brain',
(int) 189 => 'Breast',
(int) 190 => 'Colon',
(int) 191 => 'Heart',
(int) 192 => 'Kidney',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Muscle',
(int) 196 => 'Ovary',
(int) 197 => 'Placenta',
(int) 198 => 'Testis',
(int) 199 => 'Adipose',
(int) 200 => 'Kidney',
(int) 201 => 'Placenta',
(int) 202 => 'Testis',
(int) 203 => 'Adipose',
(int) 204 => 'Adrenal',
(int) 205 => 'Bladder',
(int) 206 => 'Brain',
(int) 207 => 'Breast',
(int) 208 => 'Colon',
(int) 209 => 'Heart',
(int) 210 => 'Kidney',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Muscle',
(int) 214 => 'Ovary',
(int) 215 => 'Placenta',
(int) 216 => 'Testis',
(int) 217 => 'Adipose',
(int) 218 => 'Adrenal',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis'
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000027967' => array(
[maximum depth reached]
),
'ENSMUSG00000028023' => array(
[maximum depth reached]
),
'ENSMUSG00000028028' => array(
[maximum depth reached]
),
'ENSMUSG00000046688' => array(
[maximum depth reached]
),
'ENSMUSG00000050549' => array(
[maximum depth reached]
),
'ENSMUSG00000074236' => array(
[maximum depth reached]
),
'ENSMUSG00000074237' => array(
[maximum depth reached]
),
'ENSMUSG00000074238' => array(
[maximum depth reached]
),
'ENSMUSG00000089988' => array(
[maximum depth reached]
),
'ENSMUSG00000098515' => array(
[maximum depth reached]
),
'ENSMUSG00000099640' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Liver',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Colon',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Ovary',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Liver',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Bladder',
(int) 85 => 'Brain',
(int) 86 => 'Breast',
(int) 87 => 'Colon',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Brain',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Bladder',
(int) 102 => 'Breast',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adrenal',
(int) 111 => 'Liver',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Muscle',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Adrenal',
(int) 127 => 'Bladder',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Liver',
(int) 134 => 'Lung',
(int) 135 => 'Muscle',
(int) 136 => 'Ovary',
(int) 137 => 'Placenta',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Bladder',
(int) 141 => 'Breast',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Testis',
(int) 145 => 'Liver',
(int) 146 => 'Adipose',
(int) 147 => 'Adrenal',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Heart',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Placenta',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Brain',
(int) 164 => 'Breast',
(int) 165 => 'Colon',
(int) 166 => 'Heart',
(int) 167 => 'Kidney',
(int) 168 => 'Liver',
(int) 169 => 'Lung',
(int) 170 => 'Muscle',
(int) 171 => 'Ovary',
(int) 172 => 'Placenta',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Adrenal',
(int) 176 => 'Bladder',
(int) 177 => 'Brain',
(int) 178 => 'Heart',
(int) 179 => 'Liver',
(int) 180 => 'Lung',
(int) 181 => 'Muscle',
(int) 182 => 'Ovary',
(int) 183 => 'Placenta',
(int) 184 => 'Testis',
(int) 185 => 'Bladder',
(int) 186 => 'Muscle',
(int) 187 => 'Placenta',
(int) 188 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000073331' => 'alpha-kinase 1',
'ENSG00000138660' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSG00000145365' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSG00000164093' => 'paired-like homeodomain 2',
'ENSG00000174749' => 'chromosome 4 open reading frame 32',
'ENSG00000178403' => 'neurogenin 2',
'ENSG00000200963' => 'RNA, U6 small nuclear 289, pseudogene',
'ENSG00000215961' => 'microRNA 297',
'ENSG00000240459' => null,
'ENSG00000241722' => null,
'ENSG00000243280' => null,
'ENSG00000248432' => null,
'ENSG00000248656' => null,
'ENSG00000248697' => 'TOX high mobility group box family member 4 pseudogene 1',
'ENSG00000249509' => null,
'ENSG00000249519' => 'long intergenic non-protein coding RNA 1438',
'ENSG00000249815' => null,
'ENSG00000250307' => 'tubulin beta 8 class VIII pseudogene 3',
'ENSG00000250556' => 'coiled-coil domain containing 34 pseudogene 1',
'ENSG00000250855' => null,
'ENSG00000251312' => null,
'ENSG00000251441' => 'regulator of telomere elongation helicase 1 pseudogene 1',
'ENSG00000251483' => 'lysophospholipase I pseudogene 2',
'ENSG00000251808' => null,
'ENSG00000260526' => null,
'ENSG00000272567' => null,
'ENSMUSG00000027967' => 'neurogenin 2',
'ENSMUSG00000028023' => 'paired-like homeodomain transcription factor 2',
'ENSMUSG00000028028' => 'alpha-kinase 1',
'ENSMUSG00000046688' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSMUSG00000050549' => 'RIKEN cDNA 5730508B09 gene',
'ENSMUSG00000065248' => 'predicted gene, 22293',
'ENSMUSG00000074236' => 'predicted pseudogene 9387',
'ENSMUSG00000074237' => 'predicted gene 10650',
'ENSMUSG00000074238' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSMUSG00000088537' => 'predicted gene, 23279',
'ENSMUSG00000089988' => 'predicted gene 16238',
'ENSMUSG00000098515' => 'predicted gene 27195',
'ENSMUSG00000099640' => 'predicted gene 28543',
'ENSDARG00000088832' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000073331' => 'ALPK1',
'ENSG00000138660' => 'AP1AR',
'ENSG00000145365' => 'TIFA',
'ENSG00000164093' => 'PITX2',
'ENSG00000174749' => 'C4orf32',
'ENSG00000178403' => 'NEUROG2',
'ENSG00000200963' => 'RNU6-289P',
'ENSG00000215961' => 'MIR297',
'ENSG00000240459' => 'RP11-477G18.1',
'ENSG00000241722' => 'RP11-255I10.1',
'ENSG00000243280' => 'RP11-477G18.2',
'ENSG00000248432' => 'RP11-269F21.2',
'ENSG00000248656' => 'RP11-255I10.2',
'ENSG00000248697' => 'TOX4P1',
'ENSG00000249509' => 'RP11-402J6.1',
'ENSG00000249519' => 'LINC01438',
'ENSG00000249815' => 'RP11-269F21.3',
'ENSG00000250307' => 'TUBB8P3',
'ENSG00000250556' => 'CCDC34P1',
'ENSG00000250855' => 'RP11-269F21.1',
'ENSG00000251312' => 'AC004062.2',
'ENSG00000251441' => 'RTEL1P1',
'ENSG00000251483' => 'LYPLA1P2',
'ENSG00000251808' => 'AC024198.1',
'ENSG00000260526' => 'RP11-73K9.2',
'ENSG00000272567' => 'RP11-73K9.3',
'ENSMUSG00000027967' => 'Neurog2',
'ENSMUSG00000028023' => 'Pitx2',
'ENSMUSG00000028028' => 'Alpk1',
'ENSMUSG00000046688' => 'Tifa',
'ENSMUSG00000050549' => '5730508B09Rik',
'ENSMUSG00000065248' => 'Gm22293',
'ENSMUSG00000074236' => 'Gm9387',
'ENSMUSG00000074237' => 'Gm10650',
'ENSMUSG00000074238' => 'Ap1ar',
'ENSMUSG00000088537' => 'Gm23279',
'ENSMUSG00000089988' => 'Gm16238',
'ENSMUSG00000098515' => 'Gm27195',
'ENSMUSG00000099640' => 'RP23-386C15.1',
'ENSDARG00000088832' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '110617607',
'seq_end' => '112523533',
'region_length' => '1905926',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '127625906',
'seq_end' => '129219414',
'region_length' => '1593508',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0003',
'tax_id' => '7955',
'chromosome' => '14',
'seq_start' => '37181031',
'seq_end' => '37434360',
'region_length' => '253329',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 70 => 'Brain',
(int) 98 => 'Breast',
(int) 134 => 'Colon',
(int) 162 => 'Heart',
(int) 190 => 'Kidney',
(int) 216 => 'Liver',
(int) 246 => 'Lung',
(int) 275 => 'Muscle',
(int) 308 => 'Ovary',
(int) 347 => 'Placenta',
(int) 380 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000177648' => array(
'start' => '112297370',
'end' => '112441812',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-001'
),
'ENST00000426472' => array(
'start' => '112297396',
'end' => '112353012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-012'
),
'ENST00000458497' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-201'
),
'ENST00000502366' => array(
'start' => '112297379',
'end' => '112343584',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-009'
),
'ENST00000504176' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-202'
),
'ENST00000504488' => array(
'start' => '112297385',
'end' => '112316305',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-011'
),
'ENST00000504745' => array(
'start' => '112382504',
'end' => '112442620',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-007'
),
'ENST00000505127' => array(
'start' => '112297382',
'end' => '112441664',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-005'
),
'ENST00000505176' => array(
'start' => '112297369',
'end' => '112343276',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-010'
),
'ENST00000505912' => array(
'start' => '112410915',
'end' => '112415117',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-003'
),
'ENST00000508589' => array(
'start' => '112425051',
'end' => '112427649',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-015'
),
'ENST00000509209' => array(
'start' => '112423788',
'end' => '112425963',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-014'
),
'ENST00000509688' => array(
'start' => '112297391',
'end' => '112384846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-002'
),
'ENST00000509722' => array(
'start' => '112297380',
'end' => '112441371',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-008'
),
'ENST00000512847' => array(
'start' => '112426506',
'end' => '112428111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-016'
),
'ENST00000514594' => array(
'start' => '112285509',
'end' => '112315851',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-017'
),
'ENST00000515106' => array(
'start' => '112297401',
'end' => '112412445',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-013'
),
'ENST00000515330' => array(
'start' => '112297396',
'end' => '112425693',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-006'
),
'ENST00000274000' => array(
'start' => '112231737',
'end' => '112270047',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-001'
),
'ENST00000309703' => array(
'start' => '112231833',
'end' => '112269677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-002'
),
'ENST00000502954' => array(
'start' => '112231825',
'end' => '112254894',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-004'
),
'ENST00000506522' => array(
'start' => '112231889',
'end' => '112253311',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-005'
),
'ENST00000510527' => array(
'start' => '112231740',
'end' => '112265319',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-003'
),
'ENST00000512741' => array(
'start' => '112265052',
'end' => '112266830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-006'
),
'ENST00000361717' => array(
'start' => '112274542',
'end' => '112285903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-001'
),
'ENST00000500655' => array(
'start' => '112277759',
'end' => '112281773',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-002'
),
'ENST00000306732' => array(
'start' => '110617423',
'end' => '110623103',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-005'
),
'ENST00000354925' => array(
'start' => '110617426',
'end' => '110642006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-003'
),
'ENST00000355080' => array(
'start' => '110617423',
'end' => '110637352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-002'
),
'ENST00000394595' => array(
'start' => '110617436',
'end' => '110637026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-004'
),
'ENST00000394598' => array(
'start' => '110617423',
'end' => '110637020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-001'
),
'ENST00000511837' => array(
'start' => '110618209',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-006'
),
'ENST00000511990' => array(
'start' => '110618586',
'end' => '110642016',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-007'
),
'ENST00000556049' => array(
'start' => '110618465',
'end' => '110620716',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PITX2-008'
),
'ENST00000557119' => array(
'start' => '110620277',
'end' => '110623051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-010'
),
'ENST00000607868' => array(
'start' => '110617429',
'end' => '110618826',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PITX2-009'
),
'ENST00000613094' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-201'
),
'ENST00000614423' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-202'
),
'ENST00000616641' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-203'
),
'ENST00000309733' => array(
'start' => '112145397',
'end' => '112195256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C4orf32-001'
),
'ENST00000313341' => array(
'start' => '112513516',
'end' => '112516172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEUROG2-001'
),
'ENST00000364093' => array(
'start' => '111331412',
'end' => '111331518',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-289P-201'
),
'ENST00000401142' => array(
'start' => '110860582',
'end' => '110860647',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR297-201'
),
'ENST00000497190' => array(
'start' => '112116510',
'end' => '112116903',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.1-001'
),
'ENST00000491760' => array(
'start' => '111551854',
'end' => '111552173',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-255I10.1-001'
),
'ENST00000484625' => array(
'start' => '112171215',
'end' => '112171527',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.2-001'
),
'ENST00000508010' => array(
'start' => '111804418',
'end' => '111809694',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.2-001'
),
'ENST00000510034' => array(
'start' => '111640495',
'end' => '111648808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-255I10.2-001'
),
'ENST00000514955' => array(
'start' => '112455924',
'end' => '112457785',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TOX4P1-001'
),
'ENST00000504009' => array(
'start' => '112515431',
'end' => '112546881',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-002'
),
'ENST00000506057' => array(
'start' => '112515385',
'end' => '112518236',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-001'
),
'ENST00000512794' => array(
'start' => '110794403',
'end' => '110797344',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01438-001'
),
'ENST00000511219' => array(
'start' => '111826881',
'end' => '112072698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.3-001'
),
'ENST00000510182' => array(
'start' => '112077598',
'end' => '112078400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TUBB8P3-001'
),
'ENST00000507441' => array(
'start' => '112068010',
'end' => '112068526',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CCDC34P1-001'
),
'ENST00000506068' => array(
'start' => '111802801',
'end' => '111839886',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.1-001'
),
'ENST00000509926' => array(
'start' => '111063583',
'end' => '111064227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC004062.2-001'
),
'ENST00000504490' => array(
'start' => '112356135',
'end' => '112359819',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RTEL1P1-001'
),
'ENST00000513113' => array(
'start' => '110945109',
'end' => '110945799',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LYPLA1P2-001'
),
'ENST00000515999' => array(
'start' => '110853376',
'end' => '110853470',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024198.1-201'
),
'ENST00000562919' => array(
'start' => '112229561',
'end' => '112231596',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-73K9.2-001'
),
'ENST00000610220' => array(
'start' => '112272968',
'end' => '112273316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-73K9.3-001'
),
'ENSMUST00000029587' => array(
'start' => '127633136',
'end' => '127635631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Neurog2-001'
),
'ENSMUST00000029657' => array(
'start' => '129199922',
'end' => '129219578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-005'
),
'ENSMUST00000042587' => array(
'start' => '129213972',
'end' => '129219588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-003'
),
'ENSMUST00000106382' => array(
'start' => '129199926',
'end' => '129219591',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-001'
),
'ENSMUST00000172645' => array(
'start' => '129203947',
'end' => '129218897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-006'
),
'ENSMUST00000173645' => array(
'start' => '129199969',
'end' => '129204577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-008'
),
'ENSMUST00000174623' => array(
'start' => '129214275',
'end' => '129216624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-004'
),
'ENSMUST00000174661' => array(
'start' => '129199878',
'end' => '129219590',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-002'
),
'ENSMUST00000187145' => array(
'start' => '129213932',
'end' => '129216774',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pitx2-007'
),
'ENSMUST00000029662' => array(
'start' => '127670932',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-001'
),
'ENSMUST00000159720' => array(
'start' => '127679520',
'end' => '127686340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-005'
),
'ENSMUST00000160586' => array(
'start' => '127670399',
'end' => '127780527',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Alpk1-003'
),
'ENSMUST00000161239' => array(
'start' => '127724285',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-004'
),
'ENSMUST00000162859' => array(
'start' => '127754850',
'end' => '127780490',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Alpk1-002'
),
'ENSMUST00000054483' => array(
'start' => '127789872',
'end' => '127798392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-001'
),
'ENSMUST00000163775' => array(
'start' => '127789914',
'end' => '127797950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-004'
),
'ENSMUST00000164447' => array(
'start' => '127790657',
'end' => '127797949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-002'
),
'ENSMUST00000166778' => array(
'start' => '127789916',
'end' => '127832135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tifa-005'
),
'ENSMUST00000171621' => array(
'start' => '127791381',
'end' => '127798388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-003'
),
'ENSMUST00000057198' => array(
'start' => '127869688',
'end' => '127896323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '5730508B09Rik-201'
),
'ENSMUST00000083314' => array(
'start' => '128540372',
'end' => '128540480',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22293-201'
),
'ENSMUST00000098624' => array(
'start' => '128953782',
'end' => '128955098',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9387-201'
),
'ENSMUST00000098625' => array(
'start' => '128038694',
'end' => '128040661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10650-201'
),
'ENSMUST00000051737' => array(
'start' => '127807264',
'end' => '127837492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ap1ar-201'
),
'ENSMUST00000157912' => array(
'start' => '127731594',
'end' => '127731690',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm23279-201'
),
'ENSMUST00000159343' => array(
'start' => '127691935',
'end' => '127692522',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16238-001'
),
'ENSMUST00000184283' => array(
'start' => '129210006',
'end' => '129211500',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm27195-001'
),
'ENSMUST00000188986' => array(
'start' => '129067805',
'end' => '129070544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-386C15.1-001'
),
'ENSDART00000128470' => array(
'start' => '37422276',
'end' => '37422390',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1712-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
'ENSG00000073331' => array(
[maximum depth reached]
),
'ENSG00000138660' => array(
[maximum depth reached]
),
'ENSG00000145365' => array(
[maximum depth reached]
),
'ENSG00000164093' => array(
[maximum depth reached]
),
'ENSG00000174749' => array(
[maximum depth reached]
),
'ENSG00000178403' => array(
[maximum depth reached]
),
'ENSG00000240459' => array(
[maximum depth reached]
),
'ENSG00000241722' => array(
[maximum depth reached]
),
'ENSG00000243280' => array(
[maximum depth reached]
),
'ENSG00000248656' => array(
[maximum depth reached]
),
'ENSG00000248697' => array(
[maximum depth reached]
),
'ENSG00000249509' => array(
[maximum depth reached]
),
'ENSG00000249815' => array(
[maximum depth reached]
),
'ENSG00000250556' => array(
[maximum depth reached]
),
'ENSG00000250855' => array(
[maximum depth reached]
),
'ENSG00000251312' => array(
[maximum depth reached]
),
'ENSG00000251441' => array(
[maximum depth reached]
),
'ENSG00000251483' => array(
[maximum depth reached]
),
'ENSG00000260526' => array(
[maximum depth reached]
),
'ENSG00000272567' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Placenta',
(int) 4 => 'Adrenal',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Kidney',
(int) 22 => 'Ovary',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Breast',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Heart',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Breast',
(int) 97 => 'Colon',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Muscle',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Brain',
(int) 105 => 'Colon',
(int) 106 => 'Ovary',
(int) 107 => 'Testis',
(int) 108 => 'Adipose',
(int) 109 => 'Breast',
(int) 110 => 'Heart',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Placenta',
(int) 114 => 'Testis',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Breast',
(int) 138 => 'Heart',
(int) 139 => 'Kidney',
(int) 140 => 'Lung',
(int) 141 => 'Muscle',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Muscle',
(int) 148 => 'Ovary',
(int) 149 => 'Adipose',
(int) 150 => 'Adrenal',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Colon',
(int) 164 => 'Kidney',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Heart',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Adipose',
(int) 171 => 'Brain',
(int) 172 => 'Breast',
(int) 173 => 'Colon',
(int) 174 => 'Heart',
(int) 175 => 'Muscle',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Lung',
(int) 179 => 'Adrenal',
(int) 180 => 'Brain',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Testis',
(int) 184 => 'Ovary',
(int) 185 => 'Adipose',
(int) 186 => 'Adrenal',
(int) 187 => 'Bladder',
(int) 188 => 'Brain',
(int) 189 => 'Breast',
(int) 190 => 'Colon',
(int) 191 => 'Heart',
(int) 192 => 'Kidney',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Muscle',
(int) 196 => 'Ovary',
(int) 197 => 'Placenta',
(int) 198 => 'Testis',
(int) 199 => 'Adipose',
(int) 200 => 'Kidney',
(int) 201 => 'Placenta',
(int) 202 => 'Testis',
(int) 203 => 'Adipose',
(int) 204 => 'Adrenal',
(int) 205 => 'Bladder',
(int) 206 => 'Brain',
(int) 207 => 'Breast',
(int) 208 => 'Colon',
(int) 209 => 'Heart',
(int) 210 => 'Kidney',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Muscle',
(int) 214 => 'Ovary',
(int) 215 => 'Placenta',
(int) 216 => 'Testis',
(int) 217 => 'Adipose',
(int) 218 => 'Adrenal',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis'
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000027967' => array(
[maximum depth reached]
),
'ENSMUSG00000028023' => array(
[maximum depth reached]
),
'ENSMUSG00000028028' => array(
[maximum depth reached]
),
'ENSMUSG00000046688' => array(
[maximum depth reached]
),
'ENSMUSG00000050549' => array(
[maximum depth reached]
),
'ENSMUSG00000074236' => array(
[maximum depth reached]
),
'ENSMUSG00000074237' => array(
[maximum depth reached]
),
'ENSMUSG00000074238' => array(
[maximum depth reached]
),
'ENSMUSG00000089988' => array(
[maximum depth reached]
),
'ENSMUSG00000098515' => array(
[maximum depth reached]
),
'ENSMUSG00000099640' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Liver',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Colon',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Ovary',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Liver',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Bladder',
(int) 85 => 'Brain',
(int) 86 => 'Breast',
(int) 87 => 'Colon',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Brain',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Bladder',
(int) 102 => 'Breast',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adrenal',
(int) 111 => 'Liver',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Muscle',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Adrenal',
(int) 127 => 'Bladder',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Liver',
(int) 134 => 'Lung',
(int) 135 => 'Muscle',
(int) 136 => 'Ovary',
(int) 137 => 'Placenta',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Bladder',
(int) 141 => 'Breast',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Testis',
(int) 145 => 'Liver',
(int) 146 => 'Adipose',
(int) 147 => 'Adrenal',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Heart',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Placenta',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Brain',
(int) 164 => 'Breast',
(int) 165 => 'Colon',
(int) 166 => 'Heart',
(int) 167 => 'Kidney',
(int) 168 => 'Liver',
(int) 169 => 'Lung',
(int) 170 => 'Muscle',
(int) 171 => 'Ovary',
(int) 172 => 'Placenta',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Adrenal',
(int) 176 => 'Bladder',
(int) 177 => 'Brain',
(int) 178 => 'Heart',
(int) 179 => 'Liver',
(int) 180 => 'Lung',
(int) 181 => 'Muscle',
(int) 182 => 'Ovary',
(int) 183 => 'Placenta',
(int) 184 => 'Testis',
(int) 185 => 'Bladder',
(int) 186 => 'Muscle',
(int) 187 => 'Placenta',
(int) 188 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0003',
'tax_id' => '7955',
'chromosome' => '14',
'seq_start' => '37181031',
'seq_end' => '37434360',
'region_length' => '253329',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
)
$gene_el = array(
'ENSMUST00000188986' => array(
'Bladder' => array(
'average_FPKM' => '0.031',
'stddev_FPKM' => '0.01'
),
'Muscle' => array(
'average_FPKM' => '0.072',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.082',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000099640'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.031',
'stddev_FPKM' => '0.01'
),
'Muscle' => array(
'average_FPKM' => '0.072',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.082',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000188986'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000073331' => 'alpha-kinase 1',
'ENSG00000138660' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSG00000145365' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSG00000164093' => 'paired-like homeodomain 2',
'ENSG00000174749' => 'chromosome 4 open reading frame 32',
'ENSG00000178403' => 'neurogenin 2',
'ENSG00000200963' => 'RNA, U6 small nuclear 289, pseudogene',
'ENSG00000215961' => 'microRNA 297',
'ENSG00000240459' => null,
'ENSG00000241722' => null,
'ENSG00000243280' => null,
'ENSG00000248432' => null,
'ENSG00000248656' => null,
'ENSG00000248697' => 'TOX high mobility group box family member 4 pseudogene 1',
'ENSG00000249509' => null,
'ENSG00000249519' => 'long intergenic non-protein coding RNA 1438',
'ENSG00000249815' => null,
'ENSG00000250307' => 'tubulin beta 8 class VIII pseudogene 3',
'ENSG00000250556' => 'coiled-coil domain containing 34 pseudogene 1',
'ENSG00000250855' => null,
'ENSG00000251312' => null,
'ENSG00000251441' => 'regulator of telomere elongation helicase 1 pseudogene 1',
'ENSG00000251483' => 'lysophospholipase I pseudogene 2',
'ENSG00000251808' => null,
'ENSG00000260526' => null,
'ENSG00000272567' => null,
'ENSMUSG00000027967' => 'neurogenin 2',
'ENSMUSG00000028023' => 'paired-like homeodomain transcription factor 2',
'ENSMUSG00000028028' => 'alpha-kinase 1',
'ENSMUSG00000046688' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSMUSG00000050549' => 'RIKEN cDNA 5730508B09 gene',
'ENSMUSG00000065248' => 'predicted gene, 22293',
'ENSMUSG00000074236' => 'predicted pseudogene 9387',
'ENSMUSG00000074237' => 'predicted gene 10650',
'ENSMUSG00000074238' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSMUSG00000088537' => 'predicted gene, 23279',
'ENSMUSG00000089988' => 'predicted gene 16238',
'ENSMUSG00000098515' => 'predicted gene 27195',
'ENSMUSG00000099640' => 'predicted gene 28543',
'ENSDARG00000088832' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000073331' => 'ALPK1',
'ENSG00000138660' => 'AP1AR',
'ENSG00000145365' => 'TIFA',
'ENSG00000164093' => 'PITX2',
'ENSG00000174749' => 'C4orf32',
'ENSG00000178403' => 'NEUROG2',
'ENSG00000200963' => 'RNU6-289P',
'ENSG00000215961' => 'MIR297',
'ENSG00000240459' => 'RP11-477G18.1',
'ENSG00000241722' => 'RP11-255I10.1',
'ENSG00000243280' => 'RP11-477G18.2',
'ENSG00000248432' => 'RP11-269F21.2',
'ENSG00000248656' => 'RP11-255I10.2',
'ENSG00000248697' => 'TOX4P1',
'ENSG00000249509' => 'RP11-402J6.1',
'ENSG00000249519' => 'LINC01438',
'ENSG00000249815' => 'RP11-269F21.3',
'ENSG00000250307' => 'TUBB8P3',
'ENSG00000250556' => 'CCDC34P1',
'ENSG00000250855' => 'RP11-269F21.1',
'ENSG00000251312' => 'AC004062.2',
'ENSG00000251441' => 'RTEL1P1',
'ENSG00000251483' => 'LYPLA1P2',
'ENSG00000251808' => 'AC024198.1',
'ENSG00000260526' => 'RP11-73K9.2',
'ENSG00000272567' => 'RP11-73K9.3',
'ENSMUSG00000027967' => 'Neurog2',
'ENSMUSG00000028023' => 'Pitx2',
'ENSMUSG00000028028' => 'Alpk1',
'ENSMUSG00000046688' => 'Tifa',
'ENSMUSG00000050549' => '5730508B09Rik',
'ENSMUSG00000065248' => 'Gm22293',
'ENSMUSG00000074236' => 'Gm9387',
'ENSMUSG00000074237' => 'Gm10650',
'ENSMUSG00000074238' => 'Ap1ar',
'ENSMUSG00000088537' => 'Gm23279',
'ENSMUSG00000089988' => 'Gm16238',
'ENSMUSG00000098515' => 'Gm27195',
'ENSMUSG00000099640' => 'RP23-386C15.1',
'ENSDARG00000088832' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 70 => 'Brain',
(int) 98 => 'Breast',
(int) 134 => 'Colon',
(int) 162 => 'Heart',
(int) 190 => 'Kidney',
(int) 216 => 'Liver',
(int) 246 => 'Lung',
(int) 275 => 'Muscle',
(int) 308 => 'Ovary',
(int) 347 => 'Placenta',
(int) 380 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 91,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000177648' => array(
'start' => '112297370',
'end' => '112441812',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-001'
),
'ENST00000426472' => array(
'start' => '112297396',
'end' => '112353012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-012'
),
'ENST00000458497' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-201'
),
'ENST00000502366' => array(
'start' => '112297379',
'end' => '112343584',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-009'
),
'ENST00000504176' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-202'
),
'ENST00000504488' => array(
'start' => '112297385',
'end' => '112316305',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-011'
),
'ENST00000504745' => array(
'start' => '112382504',
'end' => '112442620',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-007'
),
'ENST00000505127' => array(
'start' => '112297382',
'end' => '112441664',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-005'
),
'ENST00000505176' => array(
'start' => '112297369',
'end' => '112343276',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-010'
),
'ENST00000505912' => array(
'start' => '112410915',
'end' => '112415117',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-003'
),
'ENST00000508589' => array(
'start' => '112425051',
'end' => '112427649',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-015'
),
'ENST00000509209' => array(
'start' => '112423788',
'end' => '112425963',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-014'
),
'ENST00000509688' => array(
'start' => '112297391',
'end' => '112384846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-002'
),
'ENST00000509722' => array(
'start' => '112297380',
'end' => '112441371',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-008'
),
'ENST00000512847' => array(
'start' => '112426506',
'end' => '112428111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-016'
),
'ENST00000514594' => array(
'start' => '112285509',
'end' => '112315851',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-017'
),
'ENST00000515106' => array(
'start' => '112297401',
'end' => '112412445',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-013'
),
'ENST00000515330' => array(
'start' => '112297396',
'end' => '112425693',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-006'
),
'ENST00000274000' => array(
'start' => '112231737',
'end' => '112270047',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-001'
),
'ENST00000309703' => array(
'start' => '112231833',
'end' => '112269677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-002'
),
'ENST00000502954' => array(
'start' => '112231825',
'end' => '112254894',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-004'
),
'ENST00000506522' => array(
'start' => '112231889',
'end' => '112253311',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-005'
),
'ENST00000510527' => array(
'start' => '112231740',
'end' => '112265319',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-003'
),
'ENST00000512741' => array(
'start' => '112265052',
'end' => '112266830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-006'
),
'ENST00000361717' => array(
'start' => '112274542',
'end' => '112285903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-001'
),
'ENST00000500655' => array(
'start' => '112277759',
'end' => '112281773',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-002'
),
'ENST00000306732' => array(
'start' => '110617423',
'end' => '110623103',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-005'
),
'ENST00000354925' => array(
'start' => '110617426',
'end' => '110642006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-003'
),
'ENST00000355080' => array(
'start' => '110617423',
'end' => '110637352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-002'
),
'ENST00000394595' => array(
'start' => '110617436',
'end' => '110637026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-004'
),
'ENST00000394598' => array(
'start' => '110617423',
'end' => '110637020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-001'
),
'ENST00000511837' => array(
'start' => '110618209',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-006'
),
'ENST00000511990' => array(
'start' => '110618586',
'end' => '110642016',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-007'
),
'ENST00000556049' => array(
'start' => '110618465',
'end' => '110620716',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PITX2-008'
),
'ENST00000557119' => array(
'start' => '110620277',
'end' => '110623051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-010'
),
'ENST00000607868' => array(
'start' => '110617429',
'end' => '110618826',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PITX2-009'
),
'ENST00000613094' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-201'
),
'ENST00000614423' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-202'
),
'ENST00000616641' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-203'
),
'ENST00000309733' => array(
'start' => '112145397',
'end' => '112195256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C4orf32-001'
),
'ENST00000313341' => array(
'start' => '112513516',
'end' => '112516172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEUROG2-001'
),
'ENST00000364093' => array(
'start' => '111331412',
'end' => '111331518',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-289P-201'
),
'ENST00000401142' => array(
'start' => '110860582',
'end' => '110860647',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR297-201'
),
'ENST00000497190' => array(
'start' => '112116510',
'end' => '112116903',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.1-001'
),
'ENST00000491760' => array(
'start' => '111551854',
'end' => '111552173',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-255I10.1-001'
),
'ENST00000484625' => array(
'start' => '112171215',
'end' => '112171527',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.2-001'
),
'ENST00000508010' => array(
'start' => '111804418',
'end' => '111809694',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.2-001'
),
'ENST00000510034' => array(
'start' => '111640495',
'end' => '111648808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-255I10.2-001'
),
'ENST00000514955' => array(
'start' => '112455924',
'end' => '112457785',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TOX4P1-001'
),
'ENST00000504009' => array(
'start' => '112515431',
'end' => '112546881',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-002'
),
'ENST00000506057' => array(
'start' => '112515385',
'end' => '112518236',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-001'
),
'ENST00000512794' => array(
'start' => '110794403',
'end' => '110797344',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01438-001'
),
'ENST00000511219' => array(
'start' => '111826881',
'end' => '112072698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.3-001'
),
'ENST00000510182' => array(
'start' => '112077598',
'end' => '112078400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TUBB8P3-001'
),
'ENST00000507441' => array(
'start' => '112068010',
'end' => '112068526',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CCDC34P1-001'
),
'ENST00000506068' => array(
'start' => '111802801',
'end' => '111839886',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.1-001'
),
'ENST00000509926' => array(
'start' => '111063583',
'end' => '111064227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC004062.2-001'
),
'ENST00000504490' => array(
'start' => '112356135',
'end' => '112359819',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RTEL1P1-001'
),
'ENST00000513113' => array(
'start' => '110945109',
'end' => '110945799',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LYPLA1P2-001'
),
'ENST00000515999' => array(
'start' => '110853376',
'end' => '110853470',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024198.1-201'
),
'ENST00000562919' => array(
'start' => '112229561',
'end' => '112231596',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-73K9.2-001'
),
'ENST00000610220' => array(
'start' => '112272968',
'end' => '112273316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-73K9.3-001'
),
'ENSMUST00000029587' => array(
'start' => '127633136',
'end' => '127635631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Neurog2-001'
),
'ENSMUST00000029657' => array(
'start' => '129199922',
'end' => '129219578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-005'
),
'ENSMUST00000042587' => array(
'start' => '129213972',
'end' => '129219588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-003'
),
'ENSMUST00000106382' => array(
'start' => '129199926',
'end' => '129219591',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-001'
),
'ENSMUST00000172645' => array(
'start' => '129203947',
'end' => '129218897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-006'
),
'ENSMUST00000173645' => array(
'start' => '129199969',
'end' => '129204577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-008'
),
'ENSMUST00000174623' => array(
'start' => '129214275',
'end' => '129216624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-004'
),
'ENSMUST00000174661' => array(
'start' => '129199878',
'end' => '129219590',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-002'
),
'ENSMUST00000187145' => array(
'start' => '129213932',
'end' => '129216774',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pitx2-007'
),
'ENSMUST00000029662' => array(
'start' => '127670932',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-001'
),
'ENSMUST00000159720' => array(
'start' => '127679520',
'end' => '127686340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-005'
),
'ENSMUST00000160586' => array(
'start' => '127670399',
'end' => '127780527',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Alpk1-003'
),
'ENSMUST00000161239' => array(
'start' => '127724285',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-004'
),
'ENSMUST00000162859' => array(
'start' => '127754850',
'end' => '127780490',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Alpk1-002'
),
'ENSMUST00000054483' => array(
'start' => '127789872',
'end' => '127798392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-001'
),
'ENSMUST00000163775' => array(
'start' => '127789914',
'end' => '127797950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-004'
),
'ENSMUST00000164447' => array(
'start' => '127790657',
'end' => '127797949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-002'
),
'ENSMUST00000166778' => array(
'start' => '127789916',
'end' => '127832135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tifa-005'
),
'ENSMUST00000171621' => array(
'start' => '127791381',
'end' => '127798388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-003'
),
'ENSMUST00000057198' => array(
'start' => '127869688',
'end' => '127896323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '5730508B09Rik-201'
),
'ENSMUST00000083314' => array(
'start' => '128540372',
'end' => '128540480',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22293-201'
),
'ENSMUST00000098624' => array(
'start' => '128953782',
'end' => '128955098',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9387-201'
),
'ENSMUST00000098625' => array(
'start' => '128038694',
'end' => '128040661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10650-201'
),
'ENSMUST00000051737' => array(
'start' => '127807264',
'end' => '127837492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ap1ar-201'
),
'ENSMUST00000157912' => array(
'start' => '127731594',
'end' => '127731690',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm23279-201'
),
'ENSMUST00000159343' => array(
'start' => '127691935',
'end' => '127692522',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16238-001'
),
'ENSMUST00000184283' => array(
'start' => '129210006',
'end' => '129211500',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm27195-001'
),
'ENSMUST00000188986' => array(
'start' => '129067805',
'end' => '129070544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-386C15.1-001'
),
'ENSDART00000128470' => array(
'start' => '37422276',
'end' => '37422390',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1712-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
'ENSG00000073331' => array(
[maximum depth reached]
),
'ENSG00000138660' => array(
[maximum depth reached]
),
'ENSG00000145365' => array(
[maximum depth reached]
),
'ENSG00000164093' => array(
[maximum depth reached]
),
'ENSG00000174749' => array(
[maximum depth reached]
),
'ENSG00000178403' => array(
[maximum depth reached]
),
'ENSG00000240459' => array(
[maximum depth reached]
),
'ENSG00000241722' => array(
[maximum depth reached]
),
'ENSG00000243280' => array(
[maximum depth reached]
),
'ENSG00000248656' => array(
[maximum depth reached]
),
'ENSG00000248697' => array(
[maximum depth reached]
),
'ENSG00000249509' => array(
[maximum depth reached]
),
'ENSG00000249815' => array(
[maximum depth reached]
),
'ENSG00000250556' => array(
[maximum depth reached]
),
'ENSG00000250855' => array(
[maximum depth reached]
),
'ENSG00000251312' => array(
[maximum depth reached]
),
'ENSG00000251441' => array(
[maximum depth reached]
),
'ENSG00000251483' => array(
[maximum depth reached]
),
'ENSG00000260526' => array(
[maximum depth reached]
),
'ENSG00000272567' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Placenta',
(int) 4 => 'Adrenal',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Kidney',
(int) 22 => 'Ovary',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Breast',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Heart',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Breast',
(int) 97 => 'Colon',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Muscle',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Brain',
(int) 105 => 'Colon',
(int) 106 => 'Ovary',
(int) 107 => 'Testis',
(int) 108 => 'Adipose',
(int) 109 => 'Breast',
(int) 110 => 'Heart',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Placenta',
(int) 114 => 'Testis',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Breast',
(int) 138 => 'Heart',
(int) 139 => 'Kidney',
(int) 140 => 'Lung',
(int) 141 => 'Muscle',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Muscle',
(int) 148 => 'Ovary',
(int) 149 => 'Adipose',
(int) 150 => 'Adrenal',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Colon',
(int) 164 => 'Kidney',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Heart',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Adipose',
(int) 171 => 'Brain',
(int) 172 => 'Breast',
(int) 173 => 'Colon',
(int) 174 => 'Heart',
(int) 175 => 'Muscle',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Lung',
(int) 179 => 'Adrenal',
(int) 180 => 'Brain',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Testis',
(int) 184 => 'Ovary',
(int) 185 => 'Adipose',
(int) 186 => 'Adrenal',
(int) 187 => 'Bladder',
(int) 188 => 'Brain',
(int) 189 => 'Breast',
(int) 190 => 'Colon',
(int) 191 => 'Heart',
(int) 192 => 'Kidney',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Muscle',
(int) 196 => 'Ovary',
(int) 197 => 'Placenta',
(int) 198 => 'Testis',
(int) 199 => 'Adipose',
(int) 200 => 'Kidney',
(int) 201 => 'Placenta',
(int) 202 => 'Testis',
(int) 203 => 'Adipose',
(int) 204 => 'Adrenal',
(int) 205 => 'Bladder',
(int) 206 => 'Brain',
(int) 207 => 'Breast',
(int) 208 => 'Colon',
(int) 209 => 'Heart',
(int) 210 => 'Kidney',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Muscle',
(int) 214 => 'Ovary',
(int) 215 => 'Placenta',
(int) 216 => 'Testis',
(int) 217 => 'Adipose',
(int) 218 => 'Adrenal',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis'
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000027967' => array(
[maximum depth reached]
),
'ENSMUSG00000028023' => array(
[maximum depth reached]
),
'ENSMUSG00000028028' => array(
[maximum depth reached]
),
'ENSMUSG00000046688' => array(
[maximum depth reached]
),
'ENSMUSG00000050549' => array(
[maximum depth reached]
),
'ENSMUSG00000074236' => array(
[maximum depth reached]
),
'ENSMUSG00000074237' => array(
[maximum depth reached]
),
'ENSMUSG00000074238' => array(
[maximum depth reached]
),
'ENSMUSG00000089988' => array(
[maximum depth reached]
),
'ENSMUSG00000098515' => array(
[maximum depth reached]
),
'ENSMUSG00000099640' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Liver',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Colon',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Ovary',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Liver',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Bladder',
(int) 85 => 'Brain',
(int) 86 => 'Breast',
(int) 87 => 'Colon',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Brain',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Bladder',
(int) 102 => 'Breast',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adrenal',
(int) 111 => 'Liver',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Muscle',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Adrenal',
(int) 127 => 'Bladder',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Liver',
(int) 134 => 'Lung',
(int) 135 => 'Muscle',
(int) 136 => 'Ovary',
(int) 137 => 'Placenta',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Bladder',
(int) 141 => 'Breast',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Testis',
(int) 145 => 'Liver',
(int) 146 => 'Adipose',
(int) 147 => 'Adrenal',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Heart',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Placenta',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Brain',
(int) 164 => 'Breast',
(int) 165 => 'Colon',
(int) 166 => 'Heart',
(int) 167 => 'Kidney',
(int) 168 => 'Liver',
(int) 169 => 'Lung',
(int) 170 => 'Muscle',
(int) 171 => 'Ovary',
(int) 172 => 'Placenta',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Adrenal',
(int) 176 => 'Bladder',
(int) 177 => 'Brain',
(int) 178 => 'Heart',
(int) 179 => 'Liver',
(int) 180 => 'Lung',
(int) 181 => 'Muscle',
(int) 182 => 'Ovary',
(int) 183 => 'Placenta',
(int) 184 => 'Testis',
(int) 185 => 'Bladder',
(int) 186 => 'Muscle',
(int) 187 => 'Placenta',
(int) 188 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000073331' => 'alpha-kinase 1',
'ENSG00000138660' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSG00000145365' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSG00000164093' => 'paired-like homeodomain 2',
'ENSG00000174749' => 'chromosome 4 open reading frame 32',
'ENSG00000178403' => 'neurogenin 2',
'ENSG00000200963' => 'RNA, U6 small nuclear 289, pseudogene',
'ENSG00000215961' => 'microRNA 297',
'ENSG00000240459' => null,
'ENSG00000241722' => null,
'ENSG00000243280' => null,
'ENSG00000248432' => null,
'ENSG00000248656' => null,
'ENSG00000248697' => 'TOX high mobility group box family member 4 pseudogene 1',
'ENSG00000249509' => null,
'ENSG00000249519' => 'long intergenic non-protein coding RNA 1438',
'ENSG00000249815' => null,
'ENSG00000250307' => 'tubulin beta 8 class VIII pseudogene 3',
'ENSG00000250556' => 'coiled-coil domain containing 34 pseudogene 1',
'ENSG00000250855' => null,
'ENSG00000251312' => null,
'ENSG00000251441' => 'regulator of telomere elongation helicase 1 pseudogene 1',
'ENSG00000251483' => 'lysophospholipase I pseudogene 2',
'ENSG00000251808' => null,
'ENSG00000260526' => null,
'ENSG00000272567' => null,
'ENSMUSG00000027967' => 'neurogenin 2',
'ENSMUSG00000028023' => 'paired-like homeodomain transcription factor 2',
'ENSMUSG00000028028' => 'alpha-kinase 1',
'ENSMUSG00000046688' => 'TRAF-interacting protein with forkhead-associated domain',
'ENSMUSG00000050549' => 'RIKEN cDNA 5730508B09 gene',
'ENSMUSG00000065248' => 'predicted gene, 22293',
'ENSMUSG00000074236' => 'predicted pseudogene 9387',
'ENSMUSG00000074237' => 'predicted gene 10650',
'ENSMUSG00000074238' => 'adaptor-related protein complex 1 associated regulatory protein',
'ENSMUSG00000088537' => 'predicted gene, 23279',
'ENSMUSG00000089988' => 'predicted gene 16238',
'ENSMUSG00000098515' => 'predicted gene 27195',
'ENSMUSG00000099640' => 'predicted gene 28543',
'ENSDARG00000088832' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000073331' => 'ALPK1',
'ENSG00000138660' => 'AP1AR',
'ENSG00000145365' => 'TIFA',
'ENSG00000164093' => 'PITX2',
'ENSG00000174749' => 'C4orf32',
'ENSG00000178403' => 'NEUROG2',
'ENSG00000200963' => 'RNU6-289P',
'ENSG00000215961' => 'MIR297',
'ENSG00000240459' => 'RP11-477G18.1',
'ENSG00000241722' => 'RP11-255I10.1',
'ENSG00000243280' => 'RP11-477G18.2',
'ENSG00000248432' => 'RP11-269F21.2',
'ENSG00000248656' => 'RP11-255I10.2',
'ENSG00000248697' => 'TOX4P1',
'ENSG00000249509' => 'RP11-402J6.1',
'ENSG00000249519' => 'LINC01438',
'ENSG00000249815' => 'RP11-269F21.3',
'ENSG00000250307' => 'TUBB8P3',
'ENSG00000250556' => 'CCDC34P1',
'ENSG00000250855' => 'RP11-269F21.1',
'ENSG00000251312' => 'AC004062.2',
'ENSG00000251441' => 'RTEL1P1',
'ENSG00000251483' => 'LYPLA1P2',
'ENSG00000251808' => 'AC024198.1',
'ENSG00000260526' => 'RP11-73K9.2',
'ENSG00000272567' => 'RP11-73K9.3',
'ENSMUSG00000027967' => 'Neurog2',
'ENSMUSG00000028023' => 'Pitx2',
'ENSMUSG00000028028' => 'Alpk1',
'ENSMUSG00000046688' => 'Tifa',
'ENSMUSG00000050549' => '5730508B09Rik',
'ENSMUSG00000065248' => 'Gm22293',
'ENSMUSG00000074236' => 'Gm9387',
'ENSMUSG00000074237' => 'Gm10650',
'ENSMUSG00000074238' => 'Ap1ar',
'ENSMUSG00000088537' => 'Gm23279',
'ENSMUSG00000089988' => 'Gm16238',
'ENSMUSG00000098515' => 'Gm27195',
'ENSMUSG00000099640' => 'RP23-386C15.1',
'ENSDARG00000088832' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0001',
'tax_id' => '9606',
'chromosome' => '4',
'seq_start' => '110617607',
'seq_end' => '112523533',
'region_length' => '1905926',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '127625906',
'seq_end' => '129219414',
'region_length' => '1593508',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0003',
'tax_id' => '7955',
'chromosome' => '14',
'seq_start' => '37181031',
'seq_end' => '37434360',
'region_length' => '253329',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 70 => 'Brain',
(int) 98 => 'Breast',
(int) 134 => 'Colon',
(int) 162 => 'Heart',
(int) 190 => 'Kidney',
(int) 216 => 'Liver',
(int) 246 => 'Lung',
(int) 275 => 'Muscle',
(int) 308 => 'Ovary',
(int) 347 => 'Placenta',
(int) 380 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000177648' => array(
'start' => '112297370',
'end' => '112441812',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-001'
),
'ENST00000426472' => array(
'start' => '112297396',
'end' => '112353012',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-012'
),
'ENST00000458497' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-201'
),
'ENST00000502366' => array(
'start' => '112297379',
'end' => '112343584',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-009'
),
'ENST00000504176' => array(
'start' => '112297343',
'end' => '112442606',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ALPK1-202'
),
'ENST00000504488' => array(
'start' => '112297385',
'end' => '112316305',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-011'
),
'ENST00000504745' => array(
'start' => '112382504',
'end' => '112442620',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-007'
),
'ENST00000505127' => array(
'start' => '112297382',
'end' => '112441664',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-005'
),
'ENST00000505176' => array(
'start' => '112297369',
'end' => '112343276',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-010'
),
'ENST00000505912' => array(
'start' => '112410915',
'end' => '112415117',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-003'
),
'ENST00000508589' => array(
'start' => '112425051',
'end' => '112427649',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-015'
),
'ENST00000509209' => array(
'start' => '112423788',
'end' => '112425963',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-014'
),
'ENST00000509688' => array(
'start' => '112297391',
'end' => '112384846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-002'
),
'ENST00000509722' => array(
'start' => '112297380',
'end' => '112441371',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-008'
),
'ENST00000512847' => array(
'start' => '112426506',
'end' => '112428111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ALPK1-016'
),
'ENST00000514594' => array(
'start' => '112285509',
'end' => '112315851',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ALPK1-017'
),
'ENST00000515106' => array(
'start' => '112297401',
'end' => '112412445',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-013'
),
'ENST00000515330' => array(
'start' => '112297396',
'end' => '112425693',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ALPK1-006'
),
'ENST00000274000' => array(
'start' => '112231737',
'end' => '112270047',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-001'
),
'ENST00000309703' => array(
'start' => '112231833',
'end' => '112269677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-002'
),
'ENST00000502954' => array(
'start' => '112231825',
'end' => '112254894',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-004'
),
'ENST00000506522' => array(
'start' => '112231889',
'end' => '112253311',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-005'
),
'ENST00000510527' => array(
'start' => '112231740',
'end' => '112265319',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AP1AR-003'
),
'ENST00000512741' => array(
'start' => '112265052',
'end' => '112266830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AP1AR-006'
),
'ENST00000361717' => array(
'start' => '112274542',
'end' => '112285903',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-001'
),
'ENST00000500655' => array(
'start' => '112277759',
'end' => '112281773',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TIFA-002'
),
'ENST00000306732' => array(
'start' => '110617423',
'end' => '110623103',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-005'
),
'ENST00000354925' => array(
'start' => '110617426',
'end' => '110642006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-003'
),
'ENST00000355080' => array(
'start' => '110617423',
'end' => '110637352',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-002'
),
'ENST00000394595' => array(
'start' => '110617436',
'end' => '110637026',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-004'
),
'ENST00000394598' => array(
'start' => '110617423',
'end' => '110637020',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-001'
),
'ENST00000511837' => array(
'start' => '110618209',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-006'
),
'ENST00000511990' => array(
'start' => '110618586',
'end' => '110642016',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-007'
),
'ENST00000556049' => array(
'start' => '110618465',
'end' => '110620716',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PITX2-008'
),
'ENST00000557119' => array(
'start' => '110620277',
'end' => '110623051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-010'
),
'ENST00000607868' => array(
'start' => '110617429',
'end' => '110618826',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PITX2-009'
),
'ENST00000613094' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-201'
),
'ENST00000614423' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-202'
),
'ENST00000616641' => array(
'start' => '110617428',
'end' => '110642123',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PITX2-203'
),
'ENST00000309733' => array(
'start' => '112145397',
'end' => '112195256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C4orf32-001'
),
'ENST00000313341' => array(
'start' => '112513516',
'end' => '112516172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEUROG2-001'
),
'ENST00000364093' => array(
'start' => '111331412',
'end' => '111331518',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-289P-201'
),
'ENST00000401142' => array(
'start' => '110860582',
'end' => '110860647',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR297-201'
),
'ENST00000497190' => array(
'start' => '112116510',
'end' => '112116903',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.1-001'
),
'ENST00000491760' => array(
'start' => '111551854',
'end' => '111552173',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-255I10.1-001'
),
'ENST00000484625' => array(
'start' => '112171215',
'end' => '112171527',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-477G18.2-001'
),
'ENST00000508010' => array(
'start' => '111804418',
'end' => '111809694',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.2-001'
),
'ENST00000510034' => array(
'start' => '111640495',
'end' => '111648808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-255I10.2-001'
),
'ENST00000514955' => array(
'start' => '112455924',
'end' => '112457785',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TOX4P1-001'
),
'ENST00000504009' => array(
'start' => '112515431',
'end' => '112546881',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-002'
),
'ENST00000506057' => array(
'start' => '112515385',
'end' => '112518236',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-402J6.1-001'
),
'ENST00000512794' => array(
'start' => '110794403',
'end' => '110797344',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01438-001'
),
'ENST00000511219' => array(
'start' => '111826881',
'end' => '112072698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.3-001'
),
'ENST00000510182' => array(
'start' => '112077598',
'end' => '112078400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'TUBB8P3-001'
),
'ENST00000507441' => array(
'start' => '112068010',
'end' => '112068526',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CCDC34P1-001'
),
'ENST00000506068' => array(
'start' => '111802801',
'end' => '111839886',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-269F21.1-001'
),
'ENST00000509926' => array(
'start' => '111063583',
'end' => '111064227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC004062.2-001'
),
'ENST00000504490' => array(
'start' => '112356135',
'end' => '112359819',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RTEL1P1-001'
),
'ENST00000513113' => array(
'start' => '110945109',
'end' => '110945799',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LYPLA1P2-001'
),
'ENST00000515999' => array(
'start' => '110853376',
'end' => '110853470',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024198.1-201'
),
'ENST00000562919' => array(
'start' => '112229561',
'end' => '112231596',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-73K9.2-001'
),
'ENST00000610220' => array(
'start' => '112272968',
'end' => '112273316',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-73K9.3-001'
),
'ENSMUST00000029587' => array(
'start' => '127633136',
'end' => '127635631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Neurog2-001'
),
'ENSMUST00000029657' => array(
'start' => '129199922',
'end' => '129219578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-005'
),
'ENSMUST00000042587' => array(
'start' => '129213972',
'end' => '129219588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-003'
),
'ENSMUST00000106382' => array(
'start' => '129199926',
'end' => '129219591',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-001'
),
'ENSMUST00000172645' => array(
'start' => '129203947',
'end' => '129218897',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-006'
),
'ENSMUST00000173645' => array(
'start' => '129199969',
'end' => '129204577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-008'
),
'ENSMUST00000174623' => array(
'start' => '129214275',
'end' => '129216624',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-004'
),
'ENSMUST00000174661' => array(
'start' => '129199878',
'end' => '129219590',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pitx2-002'
),
'ENSMUST00000187145' => array(
'start' => '129213932',
'end' => '129216774',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pitx2-007'
),
'ENSMUST00000029662' => array(
'start' => '127670932',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-001'
),
'ENSMUST00000159720' => array(
'start' => '127679520',
'end' => '127686340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-005'
),
'ENSMUST00000160586' => array(
'start' => '127670399',
'end' => '127780527',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Alpk1-003'
),
'ENSMUST00000161239' => array(
'start' => '127724285',
'end' => '127780513',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Alpk1-004'
),
'ENSMUST00000162859' => array(
'start' => '127754850',
'end' => '127780490',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Alpk1-002'
),
'ENSMUST00000054483' => array(
'start' => '127789872',
'end' => '127798392',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-001'
),
'ENSMUST00000163775' => array(
'start' => '127789914',
'end' => '127797950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-004'
),
'ENSMUST00000164447' => array(
'start' => '127790657',
'end' => '127797949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-002'
),
'ENSMUST00000166778' => array(
'start' => '127789916',
'end' => '127832135',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Tifa-005'
),
'ENSMUST00000171621' => array(
'start' => '127791381',
'end' => '127798388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tifa-003'
),
'ENSMUST00000057198' => array(
'start' => '127869688',
'end' => '127896323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '5730508B09Rik-201'
),
'ENSMUST00000083314' => array(
'start' => '128540372',
'end' => '128540480',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm22293-201'
),
'ENSMUST00000098624' => array(
'start' => '128953782',
'end' => '128955098',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9387-201'
),
'ENSMUST00000098625' => array(
'start' => '128038694',
'end' => '128040661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm10650-201'
),
'ENSMUST00000051737' => array(
'start' => '127807264',
'end' => '127837492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ap1ar-201'
),
'ENSMUST00000157912' => array(
'start' => '127731594',
'end' => '127731690',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm23279-201'
),
'ENSMUST00000159343' => array(
'start' => '127691935',
'end' => '127692522',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16238-001'
),
'ENSMUST00000184283' => array(
'start' => '129210006',
'end' => '129211500',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm27195-001'
),
'ENSMUST00000188986' => array(
'start' => '129067805',
'end' => '129070544',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-386C15.1-001'
),
'ENSDART00000128470' => array(
'start' => '37422276',
'end' => '37422390',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1712-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007P9_0001' => array(
'genes_in_region' => array(
'ENSG00000073331' => array(
[maximum depth reached]
),
'ENSG00000138660' => array(
[maximum depth reached]
),
'ENSG00000145365' => array(
[maximum depth reached]
),
'ENSG00000164093' => array(
[maximum depth reached]
),
'ENSG00000174749' => array(
[maximum depth reached]
),
'ENSG00000178403' => array(
[maximum depth reached]
),
'ENSG00000240459' => array(
[maximum depth reached]
),
'ENSG00000241722' => array(
[maximum depth reached]
),
'ENSG00000243280' => array(
[maximum depth reached]
),
'ENSG00000248656' => array(
[maximum depth reached]
),
'ENSG00000248697' => array(
[maximum depth reached]
),
'ENSG00000249509' => array(
[maximum depth reached]
),
'ENSG00000249815' => array(
[maximum depth reached]
),
'ENSG00000250556' => array(
[maximum depth reached]
),
'ENSG00000250855' => array(
[maximum depth reached]
),
'ENSG00000251312' => array(
[maximum depth reached]
),
'ENSG00000251441' => array(
[maximum depth reached]
),
'ENSG00000251483' => array(
[maximum depth reached]
),
'ENSG00000260526' => array(
[maximum depth reached]
),
'ENSG00000272567' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Lung',
(int) 3 => 'Placenta',
(int) 4 => 'Adrenal',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Testis',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Kidney',
(int) 22 => 'Ovary',
(int) 23 => 'Brain',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Breast',
(int) 35 => 'Heart',
(int) 36 => 'Liver',
(int) 37 => 'Muscle',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Heart',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Breast',
(int) 97 => 'Colon',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Muscle',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Brain',
(int) 105 => 'Colon',
(int) 106 => 'Ovary',
(int) 107 => 'Testis',
(int) 108 => 'Adipose',
(int) 109 => 'Breast',
(int) 110 => 'Heart',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Placenta',
(int) 114 => 'Testis',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Bladder',
(int) 118 => 'Brain',
(int) 119 => 'Breast',
(int) 120 => 'Colon',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Breast',
(int) 138 => 'Heart',
(int) 139 => 'Kidney',
(int) 140 => 'Lung',
(int) 141 => 'Muscle',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Muscle',
(int) 148 => 'Ovary',
(int) 149 => 'Adipose',
(int) 150 => 'Adrenal',
(int) 151 => 'Breast',
(int) 152 => 'Colon',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Colon',
(int) 164 => 'Kidney',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Heart',
(int) 168 => 'Ovary',
(int) 169 => 'Testis',
(int) 170 => 'Adipose',
(int) 171 => 'Brain',
(int) 172 => 'Breast',
(int) 173 => 'Colon',
(int) 174 => 'Heart',
(int) 175 => 'Muscle',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Lung',
(int) 179 => 'Adrenal',
(int) 180 => 'Brain',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Testis',
(int) 184 => 'Ovary',
(int) 185 => 'Adipose',
(int) 186 => 'Adrenal',
(int) 187 => 'Bladder',
(int) 188 => 'Brain',
(int) 189 => 'Breast',
(int) 190 => 'Colon',
(int) 191 => 'Heart',
(int) 192 => 'Kidney',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Muscle',
(int) 196 => 'Ovary',
(int) 197 => 'Placenta',
(int) 198 => 'Testis',
(int) 199 => 'Adipose',
(int) 200 => 'Kidney',
(int) 201 => 'Placenta',
(int) 202 => 'Testis',
(int) 203 => 'Adipose',
(int) 204 => 'Adrenal',
(int) 205 => 'Bladder',
(int) 206 => 'Brain',
(int) 207 => 'Breast',
(int) 208 => 'Colon',
(int) 209 => 'Heart',
(int) 210 => 'Kidney',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Muscle',
(int) 214 => 'Ovary',
(int) 215 => 'Placenta',
(int) 216 => 'Testis',
(int) 217 => 'Adipose',
(int) 218 => 'Adrenal',
(int) 219 => 'Brain',
(int) 220 => 'Breast',
(int) 221 => 'Colon',
(int) 222 => 'Heart',
(int) 223 => 'Kidney',
(int) 224 => 'Liver',
(int) 225 => 'Lung',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis'
)
),
'CIL_0007P9_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000027967' => array(
[maximum depth reached]
),
'ENSMUSG00000028023' => array(
[maximum depth reached]
),
'ENSMUSG00000028028' => array(
[maximum depth reached]
),
'ENSMUSG00000046688' => array(
[maximum depth reached]
),
'ENSMUSG00000050549' => array(
[maximum depth reached]
),
'ENSMUSG00000074236' => array(
[maximum depth reached]
),
'ENSMUSG00000074237' => array(
[maximum depth reached]
),
'ENSMUSG00000074238' => array(
[maximum depth reached]
),
'ENSMUSG00000089988' => array(
[maximum depth reached]
),
'ENSMUSG00000098515' => array(
[maximum depth reached]
),
'ENSMUSG00000099640' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Liver',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Colon',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Ovary',
(int) 48 => 'Liver',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Ovary',
(int) 52 => 'Testis',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Ovary',
(int) 66 => 'Adipose',
(int) 67 => 'Adrenal',
(int) 68 => 'Bladder',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Liver',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Bladder',
(int) 85 => 'Brain',
(int) 86 => 'Breast',
(int) 87 => 'Colon',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Brain',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Adipose',
(int) 101 => 'Bladder',
(int) 102 => 'Breast',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Adrenal',
(int) 111 => 'Liver',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Bladder',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Muscle',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Adrenal',
(int) 127 => 'Bladder',
(int) 128 => 'Brain',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Liver',
(int) 134 => 'Lung',
(int) 135 => 'Muscle',
(int) 136 => 'Ovary',
(int) 137 => 'Placenta',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Bladder',
(int) 141 => 'Breast',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Testis',
(int) 145 => 'Liver',
(int) 146 => 'Adipose',
(int) 147 => 'Adrenal',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Breast',
(int) 151 => 'Colon',
(int) 152 => 'Heart',
(int) 153 => 'Kidney',
(int) 154 => 'Liver',
(int) 155 => 'Lung',
(int) 156 => 'Muscle',
(int) 157 => 'Ovary',
(int) 158 => 'Placenta',
(int) 159 => 'Testis',
(int) 160 => 'Adipose',
(int) 161 => 'Adrenal',
(int) 162 => 'Bladder',
(int) 163 => 'Brain',
(int) 164 => 'Breast',
(int) 165 => 'Colon',
(int) 166 => 'Heart',
(int) 167 => 'Kidney',
(int) 168 => 'Liver',
(int) 169 => 'Lung',
(int) 170 => 'Muscle',
(int) 171 => 'Ovary',
(int) 172 => 'Placenta',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Adrenal',
(int) 176 => 'Bladder',
(int) 177 => 'Brain',
(int) 178 => 'Heart',
(int) 179 => 'Liver',
(int) 180 => 'Lung',
(int) 181 => 'Muscle',
(int) 182 => 'Ovary',
(int) 183 => 'Placenta',
(int) 184 => 'Testis',
(int) 185 => 'Bladder',
(int) 186 => 'Muscle',
(int) 187 => 'Placenta',
(int) 188 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007P9_0003',
'tax_id' => '7955',
'chromosome' => '14',
'seq_start' => '37181031',
'seq_end' => '37434360',
'region_length' => '253329',
'region_type' => 'UCNEbase',
'el_id' => 'PITX2'
)
)
$gene_el = array(
'ENSMUST00000188986' => array(
'Bladder' => array(
'average_FPKM' => '0.031',
'stddev_FPKM' => '0.01'
),
'Muscle' => array(
'average_FPKM' => '0.072',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.082',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000099640'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.031',
'stddev_FPKM' => '0.01'
),
'Muscle' => array(
'average_FPKM' => '0.072',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.082',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.119',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000188986'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(ALPK1)