C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00080F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm929 VISTA 9606 4:111826456-112428336
GeneTranscriptPositionBiotype
ENSG00000073331 (ALPK1)
alpha-kinase 1 		ENST00000177648 (ALPK1-001) 112297370-112441812 protein_coding
ENST00000426472 (ALPK1-012) 112297396-112353012 processed_transcript
ENST00000458497 (ALPK1-201) 112297343-112442606 protein_coding
ENST00000502366 (ALPK1-009) 112297379-112343584 processed_transcript
ENST00000504176 (ALPK1-202) 112297343-112442606 protein_coding
ENST00000504488 (ALPK1-011) 112297385-112316305 retained_intron
ENST00000504745 (ALPK1-007) 112382504-112442620 retained_intron
ENST00000505127 (ALPK1-005) 112297382-112441664 nonsense_mediated_decay
ENST00000505176 (ALPK1-010) 112297369-112343276 processed_transcript
ENST00000505912 (ALPK1-003) 112410915-112415117 processed_transcript
ENST00000508589 (ALPK1-015) 112425051-112427649 processed_transcript
ENST00000509209 (ALPK1-014) 112423788-112425963 retained_intron
ENST00000509688 (ALPK1-002) 112297391-112384846 retained_intron
ENST00000509722 (ALPK1-008) 112297380-112441371 nonsense_mediated_decay
ENST00000512847 (ALPK1-016) 112426506-112428111 retained_intron
ENST00000514594 (ALPK1-017) 112285509-112315851 processed_transcript
ENST00000515106 (ALPK1-013) 112297401-112412445 nonsense_mediated_decay
ENST00000515330 (ALPK1-006) 112297396-112425693 nonsense_mediated_decay
ENSG00000138660 (AP1AR)
adaptor-related protein complex 1 associated regulatory protein 		ENST00000274000 (AP1AR-001) 112231737-112270047 protein_coding
ENST00000309703 (AP1AR-002) 112231833-112269677 protein_coding
ENST00000502954 (AP1AR-004) 112231825-112254894 retained_intron
ENST00000506522 (AP1AR-005) 112231889-112253311 retained_intron
ENST00000510527 (AP1AR-003) 112231740-112265319 retained_intron
ENST00000512741 (AP1AR-006) 112265052-112266830 protein_coding
ENSG00000145365 (TIFA)
TRAF-interacting protein with forkhead-associated domain 		ENST00000361717 (TIFA-001) 112274542-112285903 protein_coding
ENST00000500655 (TIFA-002) 112277759-112281773 protein_coding
ENSG00000174749 (C4orf32)
chromosome 4 open reading frame 32 		ENST00000309733 (C4orf32-001) 112145397-112195256 protein_coding
ENSG00000240459 (RP11-477G18.1)
 ENST00000497190 (RP11-477G18.1-001) 112116510-112116903 processed_pseudogene
ENSG00000243280 (RP11-477G18.2)
 ENST00000484625 (RP11-477G18.2-001) 112171215-112171527 processed_pseudogene
ENSG00000249815 (RP11-269F21.3)
 ENST00000511219 (RP11-269F21.3-001) 111826881-112072698 lincRNA
ENSG00000250556 (CCDC34P1)
coiled-coil domain containing 34 pseudogene 1 		ENST00000507441 (CCDC34P1-001) 112068010-112068526 processed_pseudogene
ENSG00000250855 (RP11-269F21.1)
 ENST00000506068 (RP11-269F21.1-001) 111802801-111839886 lincRNA
ENSG00000251441 (RTEL1P1)
regulator of telomere elongation helicase 1 pseudogene 1 		ENST00000504490 (RTEL1P1-001) 112356135-112359819 processed_pseudogene
ENSG00000260526 (RP11-73K9.2)
 ENST00000562919 (RP11-73K9.2-001) 112229561-112231596 antisense
ENSG00000272567 (RP11-73K9.3)
 ENST00000610220 (RP11-73K9.3-001) 112272968-112273316 lincRNA
CIL_00080F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm929 VISTA 10090 3:127613726-128215301
GeneTranscriptPositionBiotype
ENSMUSG00000027967 (Neurog2)
neurogenin 2 		ENSMUST00000029587 (Neurog2-001) 127633136-127635631 protein_coding
ENSMUSG00000028028 (Alpk1)
alpha-kinase 1 		ENSMUST00000029662 (Alpk1-001) 127670932-127780513 protein_coding
ENSMUST00000159720 (Alpk1-005) 127679520-127686340 protein_coding
ENSMUST00000160586 (Alpk1-003) 127670399-127780527 retained_intron
ENSMUST00000161239 (Alpk1-004) 127724285-127780513 protein_coding
ENSMUST00000162859 (Alpk1-002) 127754850-127780490 processed_transcript
ENSMUSG00000046688 (Tifa)
TRAF-interacting protein with forkhead-associated domain 		ENSMUST00000054483 (Tifa-001) 127789872-127798392 protein_coding
ENSMUST00000163775 (Tifa-004) 127789914-127797950 protein_coding
ENSMUST00000164447 (Tifa-002) 127790657-127797949 protein_coding
ENSMUST00000166778 (Tifa-005) 127789916-127832135 processed_transcript
ENSMUST00000171621 (Tifa-003) 127791381-127798388 protein_coding
ENSMUSG00000050549 (5730508B09Rik)
RIKEN cDNA 5730508B09 gene 		ENSMUST00000057198 (5730508B09Rik-201) 127869688-127896323 protein_coding
ENSMUSG00000051278 (Zgrf1)
zinc finger, GRF-type containing 1 		ENSMUST00000043108 (Zgrf1-201) 127553489-127618021 protein_coding
ENSMUSG00000074237 (Gm10650)
predicted gene 10650 		ENSMUST00000098625 (Gm10650-201) 128038694-128040661 protein_coding
ENSMUSG00000074238 (Ap1ar)
adaptor-related protein complex 1 associated regulatory protein 		ENSMUST00000051737 (Ap1ar-201) 127807264-127837492 protein_coding
ENSMUSG00000089988 (Gm16238)
predicted gene 16238 		ENSMUST00000159343 (Gm16238-001) 127691935-127692522 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080F_0001ENSG00000073331ENST00000177648ENST00000426472ENST00000458497ENST00000502366ENST00000504176ENST00000504488ENST00000504745ENST00000505127ENST00000505176ENST00000505912ENST00000508589ENST00000509209ENST00000509688ENST00000509722ENST00000512847ENST00000514594ENST00000515106ENST00000515330ENSG00000138660ENST00000274000ENST00000309703ENST00000502954ENST00000506522ENST00000510527ENST00000512741ENSG00000145365ENST00000361717ENST00000500655ENSG00000174749ENST00000309733ENSG00000240459ENST00000497190ENSG00000243280ENST00000484625ENSG00000249815ENST00000511219ENSG00000250556ENST00000507441ENSG00000250855ENST00000506068ENSG00000251441ENST00000504490ENSG00000260526ENST00000562919ENSG00000272567ENST00000610220CIL_00080F_0002ENSMUSG00000027967ENSMUST00000029587ENSMUSG00000028028ENSMUST00000029662ENSMUST00000159720ENSMUST00000160586ENSMUST00000161239ENSMUST00000162859ENSMUSG00000046688ENSMUST00000054483ENSMUST00000163775ENSMUST00000164447ENSMUST00000166778ENSMUST00000171621ENSMUSG00000050549ENSMUST00000057198ENSMUSG00000051278ENSMUST00000043108ENSMUSG00000074237ENSMUST00000098625ENSMUSG00000074238ENSMUST00000051737ENSMUSG00000089988ENSMUST00000159343
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000073331 ENST00000177648 N/A N/A N/A N/A 1.067±0.00 1.283±0.00 N/A N/A N/A 1.697±0.55 N/A N/A 0.993±0.00 N/A
ENST00000426472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458497 N/A 2.548±0.00 N/A N/A 0.734±0.00 N/A 0.612±0.00 0.809±0.39 N/A 1.587±0.00 0.375±0.00 1.735±1.27 0.835±0.09 0.696±0.00
ENST00000502366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504176 N/A N/A N/A 0.240±0.00 0.842±0.00 N/A N/A N/A N/A N/A 0.427±0.00 1.054±0.00 N/A 0.652±0.19
ENST00000504488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504745 N/A N/A 0.741±0.00 N/A 0.668±0.00 0.856±0.00 N/A 0.696±0.00 N/A N/A N/A 0.421±0.00 N/A N/A
ENST00000505127 N/A N/A N/A 1.275±0.00 N/A N/A N/A N/A N/A N/A 0.266±0.00 1.771±0.00 1.150±0.00 0.759±0.00
ENST00000505176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509688 N/A N/A N/A N/A 1.581±0.00 1.543±0.00 N/A 0.739±0.00 1.044±0.00 1.998±0.00 N/A 1.264±0.00 N/A N/A
ENST00000509722 N/A N/A N/A N/A 0.841±0.08 N/A 0.368±0.00 N/A 0.479±0.00 N/A 0.760±0.00 N/A N/A 0.425±0.00
ENST00000512847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138660 ENST00000274000 3.178±0.00 2.424±0.00 2.830±0.00 3.266±0.42 3.562±1.15 3.861±0.13 1.281±0.47 4.866±2.42 1.974±0.44 2.433±1.84 1.293±0.00 5.484±1.33 2.041±0.85 6.805±1.63
ENST00000309703 N/A 0.517±0.00 N/A 4.774±1.95 1.014±0.24 3.999±0.00 0.883±0.08 2.560±0.00 2.893±0.00 1.840±0.00 0.711±0.00 2.221±0.00 0.601±0.21 N/A
ENST00000502954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145365 ENST00000361717 1.751±0.00 3.724±0.00 N/A 0.628±0.31 1.091±0.09 1.901±0.00 1.075±0.10 1.544±0.04 1.105±0.42 2.790±0.46 0.367±0.27 1.951±0.59 1.958±0.19 0.980±0.49
ENST00000500655 N/A N/A N/A 0.781±0.00 N/A N/A 2.507±0.84 N/A 3.529±0.00 7.715±0.00 2.252±0.00 4.074±0.00 4.783±0.00 N/A
ENSG00000174749 ENST00000309733 14.126±0.00 4.743±0.00 4.073±0.00 2.051±1.13 7.636±1.36 5.112±0.03 4.046±0.38 3.289±1.12 0.747±0.00 5.155±2.65 1.374±0.08 3.213±2.22 3.166±0.53 5.489±2.31
ENSG00000240459 ENST00000497190 0.042±0.00 0.044±0.00 N/A N/A 0.134±0.00 N/A 0.041±0.00 0.267±0.00 N/A 0.307±0.00 0.118±0.00 N/A N/A N/A
ENSG00000243280 ENST00000484625 0.498±0.00 0.047±0.00 N/A N/A 1.533±1.11 1.569±1.26 0.132±0.00 N/A 9.465±0.00 0.151±0.00 4.323±0.00 0.156±0.01 N/A 0.084±0.00
ENSG00000249815 ENST00000511219 0.057±0.00 N/A N/A 0.076±0.00 0.168±0.00 0.053±0.00 0.035±0.00 N/A N/A N/A 0.085±0.00 N/A 0.028±0.00 0.095±0.01
ENSG00000250556 ENST00000507441 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.293±0.00 N/A N/A N/A N/A
ENSG00000250855 ENST00000506068 N/A 0.332±0.00 N/A 0.191±0.00 N/A N/A 0.024±0.00 0.050±0.00 N/A N/A N/A N/A N/A 0.095±0.00
ENSG00000251441 ENST00000504490 0.006±0.00 0.039±0.00 0.234±0.00 0.008±0.00 0.149±0.13 0.134±0.11 0.036±0.00 0.161±0.00 0.036±0.03 0.188±0.11 0.151±0.00 0.036±0.02 0.025±0.00 0.094±0.00
ENSG00000260526 ENST00000562919 0.188±0.00 0.330±0.00 0.442±0.00 0.455±0.26 0.257±0.07 0.131±0.04 0.076±0.01 0.304±0.01 0.114±0.01 0.235±0.09 0.108±0.00 0.224±0.16 0.145±0.02 0.269±0.09
ENSG00000272567 ENST00000610220 0.397±0.00 0.403±0.00 N/A 0.067±0.00 0.157±0.00 0.229±0.02 0.064±0.00 0.148±0.00 0.294±0.00 0.372±0.00 N/A 0.525±0.49 0.676±0.00 0.440±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027967 ENSMUST00000029587 N/A 0.019±0.00 0.009±0.00 19.206±16.76 0.021±0.00 0.027±0.00 N/A N/A 0.085±0.11 N/A N/A N/A 2.696±3.29 0.059±0.02
ENSMUSG00000028028 ENSMUST00000029662 N/A 0.514±0.25 2.085±0.00 0.255±0.08 0.547±0.21 1.516±0.43 N/A 0.296±0.13 0.072±0.02 0.769±0.00 0.248±0.00 0.690±0.39 0.237±0.08 0.493±0.18
ENSMUST00000159720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.717±0.00 N/A N/A
ENSMUST00000160586 0.867±0.06 0.485±0.22 4.455±1.65 0.365±0.14 0.949±0.51 1.435±0.61 0.391±0.18 0.248±0.10 0.207±0.12 0.872±0.07 0.172±0.06 0.918±0.30 0.199±0.13 0.597±0.11
ENSMUST00000161239 N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A N/A 1.229±0.00
ENSMUST00000162859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046688 ENSMUST00000054483 1.140±0.27 1.543±0.63 2.595±0.03 0.573±0.13 2.882±0.92 8.277±0.79 0.454±0.15 1.526±0.30 2.750±0.93 1.632±0.28 0.223±0.09 1.458±0.77 0.282±0.13 0.442±0.04
ENSMUST00000163775 N/A N/A N/A 0.943±0.00 N/A N/A N/A N/A N/A N/A 0.276±0.00 0.596±0.00 0.145±0.05 N/A
ENSMUST00000164447 0.485±0.13 N/A 2.007±0.00 N/A 1.478±1.07 N/A 0.193±0.03 0.691±0.23 1.630±0.27 N/A 0.142±0.04 1.913±0.07 0.497±0.40 0.278±0.03
ENSMUST00000166778 N/A 5.746±1.69 N/A N/A N/A N/A N/A N/A 1.155±0.00 N/A N/A 1.210±0.15 N/A N/A
ENSMUST00000171621 0.854±0.42 N/A 1.369±0.29 0.510±0.03 1.161±0.53 N/A 0.389±0.24 0.527±0.20 3.591±1.87 0.745±0.06 0.219±0.12 0.896±0.56 0.462±0.15 0.184±0.11
ENSMUSG00000050549 ENSMUST00000057198 6.635±1.13 9.938±2.45 10.017±1.05 1.268±0.24 7.432±4.59 13.573±2.46 1.016±0.30 3.466±1.25 11.144±10.97 7.702±2.21 1.442±0.26 1.977±1.09 1.818±1.06 8.472±2.96
ENSMUSG00000051278 ENSMUST00000043108 0.189±0.11 0.119±0.02 0.256±0.08 0.740±0.27 0.213±0.05 0.179±0.12 0.076±0.04 0.116±0.01 1.156±1.35 0.235±0.03 0.135±0.05 0.505±0.30 0.734±0.42 1.110±0.47
ENSMUSG00000074237 ENSMUST00000098625 N/A N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000074238 ENSMUST00000051737 8.431±2.37 24.146±10.34 9.574±0.38 13.271±7.42 5.202±0.69 33.159±7.49 4.421±1.59 18.465±2.73 8.987±3.34 10.587±3.97 6.637±0.80 13.685±4.85 16.003±5.13 5.450±0.80
ENSMUSG00000089988 ENSMUST00000159343 0.117±0.06 0.187±0.01 0.423±0.16 0.126±0.09 0.213±0.09 0.327±0.22 0.161±0.08 0.099±0.00 0.082±0.03 0.286±0.07 0.103±0.01 0.406±0.16 0.153±0.08 0.146±0.12

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