C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hydroxyacyl-Coenzyme A dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029610 Hadh-001 ENSMUSG00000027984 10090 - 3:131233419-131272101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029610 165.438±50.47 190.683±61.09 51.721±4.20 9.702±2.81 137.066±45.15 125.644±34.29 308.183±20.41 266.211±10.16 178.801±83.42 60.211±8.76 77.526±11.03 74.494±17.71 79.084±25.52 16.010±7.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T5 CIL_0008T5_0002 VISTA 3:130661754-131264427
CIL_00097H CIL_00097H_0002 VISTA 3:130836337-131437858
CIL_0000FF CIL_0000FF_0002 CGP 3:131110471-131272101
CIL_0000FG CIL_0000FG_0002 CGP 3:131233419-131303227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003857 IDA 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0009725 IEA response to hormone
GO:0014823 IEA response to activity
GO:0032868 IEA response to insulin
GO:0042493 IEA response to drug
GO:0046676 IEA negative regulation of insulin secretion
GO:0070403 IEA NAD+ binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309522 HADH-001 protein_coding Homo_sapiens 0 953
ENST00000403312 HADH-002 protein_coding Homo_sapiens 0 741
ENST00000505878 HADH-003 protein_coding Homo_sapiens 6e-28 130
ENST00000511742 HADH-004 nonsense_mediated_decay Homo_sapiens 2e-28 130
ENST00000603302 HADH-201 protein_coding Homo_sapiens 0 741

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