C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hydroxyacyl-CoA dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309522 HADH-001 ENSG00000138796 9606 + 4:107989784-108035175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309522 31.771±0.00 10.639±0.00 5.122±0.00 5.882±3.83 29.360±24.12 21.515±4.73 42.107±32.10 25.277±6.73 22.822±19.18 7.614±4.79 22.982±9.95 21.855±10.86 17.754±8.85 36.761±13.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097H CIL_00097H_0001 VISTA 4:107841068-108442627

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003857 TAS:IEA 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006631 IEA fatty acid metabolic process
GO:0006635 IEA fatty acid beta-oxidation
GO:0016491 IEA oxidoreductase activity
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0051287 IEA NAD binding
GO:0055114 IEA oxidation-reduction process
GO:0070403 IEA NAD+ binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029610 Hadh-001 protein_coding Mus_musculus 0 953
ENSMUST00000152427 Hadh-002 retained_intron Mus_musculus 0 414

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